v0.15.1

fafbseg 0.15.1

• Support for generic si git repositories by @jefferis in #209
  This will be helpful for distributing annotations for other papers
• add flywire_user_info() by @jefferis in #208

Full Changelog: v0.15.0...v0.15.1

v0.15.0

fafbseg 0.15.0

This contains substantial under the hood changes in flywire_cave_query()
which may be breaking in some instances, based on fixes of my
understanding of CAVE live queries.

Changes in flywire_partner_summary() are also significant in allowing
considerably faster queries for multiple input neurons with cave now the
default query method.

What's Changed

• flywire_cave_query(): add livelive, fix live query by @jefferis in #206
• Faster flywire_partner_summary() queries by @jefferis in #205
• Fix/actions aug 2024 by @jefferis in #207

Full Changelog: v0.14.2...v0.15.0

v0.14.2

fafbseg 0.14.2

This is a pre-release in preparation for a major (0.15.0) release and does feature some API changes in flywire_partner_summary() (motivated by fanc/banc support in the coconatfly package).

What's Changed

• Streamline flywire_partner_summary() by @jefferis in #203
• flywire_cave_query() query enhancements inc select_columns to speed up partner queries by @jefferis in #202
• fix bad gateway error for nucleus_table_info() and friends by @jefferis in #204
• Direct support for flyem shorturls including via tinyurl by @jefferis in #201

Full Changelog: v0.14.1...v0.14.2

v0.14.1

fafbseg 0.14.1

• teach flywire_ids() to accept any whitespace by @jefferis in #198
• Teach flywire_ids() to accept file argument by @jefferis in #199
• fix downloading v630 annotations by @jefferis in #200
• dr_fafbseg - summarise options in dr_fafbseg() (1eabc55)

Full Changelog: v0.14.0...v0.14.1

v0.14.0

fafbseg 0.14.0

This major release provides support for the v783 materialisation that we expect to accompany the public release of the FlyWire dataset. It is also features numerous bug fixes/usability improvements.

• flywire_partner_summary: support versions/timestamps by @jefferis in #178
• Fix rawcoords in flywire-nuclei by @jefferis in #179
• Fix: fetch static metadata when no cell type by @jefferis in #180
• simplify install on github by @jefferis in #181
• fix stale flytable base cache by @jefferis in #175
• Feature/GitHub pkgdown by @jefferis in #182
• Fix/standardise userdir by @jefferis in #183
• Respect user selected data version by @jefferis in #184
• teach flywire_timestamp to accept 'now' by @jefferis in #185
• full support for arbitrary datastacks for read_l2skel by @jefferis in #186
• give simple_python extra option for meshparty et al by @jefferis in #188
• Feature cave views by @jefferis in #190
• Fix/flywire latest badids by @jefferis in #191
• support for materialisation 783 artefacts by @jefferis in #192
• changes for fafbseg-py v3 by @jefferis in #194
• Fix/flytable shared tables by @jefferis in #195
• flytable_base4table too conservative listing tables by @jefferis in #197
• Fix/ngl annotation cols by @jefferis in #196

Full Changelog: v0.13.0...v0.14.0

v0.13.0

• Feature optic info table by @jefferis in #174
• Fix fafbseg inner_join / tests by @jefferis in #176
• Support for released cell type / connectivity data by @jefferis in #177
• Add support for ito_lee_hemilineage in searches (d17a6ed)
• Give add_celltype_info a suffix argument (136ecab)
• updates tests for FAFB LR swap (afe883e)
• Fix flywire_latestids for 64 bit root ids (aa8e560)

Full Changelog: v0.12.0...v0.13.0

v0.12.0

What's Changed

• Neuroglancer URL handling (remember baseurl, support tinyurl) by @jefferis in #167
• make flywire_raw2nm() use vox dims if supplied by @jefferis in #169
• add xform.ngscene by @jefferis in #168
• Add support for cached flywire connectome dumps by @jefferis in #170
• Feature/python improvements by @jefferis in #171
• Feature/superclass by @jefferis in #172
• Export annotations to neuroglancer info files by @jefferis in #173

Full Changelog: v0.11.1...v0.12.0

v0.11.1

• Fix nasty bug in adjacency matrix when inputids!=outputids by @jefferis in #165. Also ~2x speedup for many use cases.

Full Changelog: v0.11.0...v0.11.1

v0.11.0

• Support for flytable cell type queries and timestamped id updates by @jefferis in #163
• Fix flytable maximum cells error by adjusting chunksize by @jefferis in #147
• respect chunksize when provided in flytable_list_rows by @jefferis in #148
• Add support for L2 ids and speed up flywire_latestid by @jefferis in #151
• Better reporting on token locations by @jefferis in #154
• Feature/ng annotations by @jefferis in #153
• Fix doc typo by @jefferis in #156
• Fixes for flywire_cave_query timestamp handling by @jefferis in #159
• Feature navis+fafbseg-py for reading L2 skeletons by @jefferis in #160
• Teach flywire_cave_query about query filter dicts by @jefferis in #162

Full Changelog: v0.10.0...v0.11.0

v0.10.0

What's Changed

• Feature flytable_append_rows by @jefferis in #132
• Update Buhmann ref date by @emilkind in #138
• Feature/misc flywire updates by @jefferis in #139
• Add flywire_nuclei to pkgdown by @jefferis in #140
• More flytable enhancements / fixes by @jefferis in #141
• Better handling of NAs in when handling body ids by @jefferis in #142
• Fix/spine rename by @jefferis in #146
• spine.janelia.org -> services.itanna.io by @perlman in #144
• changed top.nt and top.p to top_nt and top_p by @alexanderbates in #143

New Contributors

• @emilkind made their first contribution in #138
• @perlman made their first contribution in #144

Full Changelog: v0.9.4...v0.10.0