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fafbseg v0.7.0

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@jefferis jefferis released this 11 Sep 21:39
· 1396 commits to master since this release

fafbseg 0.7.0

  • basic support for reading meshes via CloudVolume e.g. to fetch neurons from
    flywire.ai. See read_cloudvolume_meshes() for details including the required
    Python setup.
  • very basic support for skeletonising neurons meshed (e.g. flywire neurons)
    via meshparty_skeletonize()
  • add flywire2fafb() to support for transforming neurons FlyWire->FAFB
    (and with some loss of accuracy in the reverse) (#11)
  • includes a fix for NaN values in return (#12,#13)
  • much faster FlyWire->FAFB transformation, up to millions of points per minute
    (#24)
  • moved repo to https://github.com/natverse/fafbseg (#19)

fafbseg 0.6.5

  • default chunksize for brainmaps_xyz2id() reduce to 200 to reflect API
    changes.
  • new functions choose_segmentation() and with_segmentation() to choose
    default auto-segmentation
  • New Shiny app (see README and https://jefferislab.shinyapps.io/CATMAID-Neuroglancer-Converter/)
  • give brainmaps_fetch() a generic cache option and the ability to clear the
    cache with brainmaps_clear_cache() (#8)
  • give brainmaps_fetch() a retry option to help with sporadic timeouts (#9)
  • give catmaid2ngl() a chunksize option that can be used to reduce timeout
    issues.
  • simplify package .onLoad and retire fafbseg.divisor option
    (now calculated automatically rather than being a user option)
  • simplify internal brainmaps_voxdims function using cache mechanism

fafbseg 0.6.4

  • fix bug revealed by latest public version of zip package
  • fix missing import of dplyr::n() in find_topn()

fafbseg 0.6.3

  • Give find_topn() and read_top() ability to return segments in
    increasing (rather than decreasing) size order.