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@mucosal-immunology-lab

Mucosal Immunology Lab - Monash University, Melbourne AU

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  1. microbiome-analysis microbiome-analysis Public

    A selection of analytical approaches, tools, and utilities for the processing of microbiome data derived from either 16S rRNA amplicon sequencing or shotgun metagenomics.

    R 2

  2. autodock-gpu autodock-gpu Public

    A guide for installation and running of small molecule binding prediction using the AutoDock-GPU tool.

    1

  3. scRNAseq-STARsolo scRNAseq-STARsolo Public

    Analysis of scRNAseq data

    1

  4. BT_groups2-4_analysis BT_groups2-4_analysis Public

    The data processing and subsequent multi-omic integration and analysis pipeline utilised in analysis bronchial brush and bronchoalveolar lavage fluid from the Breathing Together Cohort groups 2-4. …

    R 1

  5. RNAseq_NFCORE RNAseq_NFCORE Public

    Guide to using the nf-core/rnaseq pipeline on the MASSIVE cluster.

    1

  6. metabolite-database metabolite-database Public

    A collection of information relating to metabolites and lipids, and their roles and functions in regards to mucosal immunology.

Repositories

Showing 10 of 14 repositories
  • bioinformatics-hub Public

    This repository will aim to reformat our existing workflows into a more easily accessible format.

    mucosal-immunology-lab/bioinformatics-hub’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Dec 18, 2024
  • lcms-analysis Public

    Guide for processing and analysis of LCMS-derived metabolomics and lipidomics data.

    mucosal-immunology-lab/lcms-analysis’s past year of commit activity
    0 0 0 0 Updated Aug 13, 2024
  • public_datasets Public

    Here we provide a list of publicly-available datasets that we have generated and uploaded to repositories.

    mucosal-immunology-lab/public_datasets’s past year of commit activity
    0 MIT 0 0 0 Updated Aug 9, 2024
  • nf-mucimmuno Public
    mucosal-immunology-lab/nf-mucimmuno’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Jul 24, 2024
  • elisa-analysis Public

    Analysis of ELISA results using 4-PL regression.

    mucosal-immunology-lab/elisa-analysis’s past year of commit activity
    0 MIT 0 0 0 Updated Jun 26, 2024
  • data_best_practices Public

    A guide to data storage best practices

    mucosal-immunology-lab/data_best_practices’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 18, 2024
  • RNAseq_NFCORE Public

    Guide to using the nf-core/rnaseq pipeline on the MASSIVE cluster.

    mucosal-immunology-lab/RNAseq_NFCORE’s past year of commit activity
    1 MIT 0 0 0 Updated May 21, 2024
  • sequencing-data-submission Public

    A guide to submitting sequencing data to the National Center for Biotechnology Information (NCBI) sequencing read archive (SRA) database. Includes information on uploading data to the SRA using the high-speed Aspera Connect tool.

    mucosal-immunology-lab/sequencing-data-submission’s past year of commit activity
    0 MIT 0 0 0 Updated Mar 13, 2024
  • microbiome-analysis Public

    A selection of analytical approaches, tools, and utilities for the processing of microbiome data derived from either 16S rRNA amplicon sequencing or shotgun metagenomics.

    mucosal-immunology-lab/microbiome-analysis’s past year of commit activity
    R 2 0 0 0 Updated Feb 8, 2024
  • BT_groups2-4_analysis Public

    The data processing and subsequent multi-omic integration and analysis pipeline utilised in analysis bronchial brush and bronchoalveolar lavage fluid from the Breathing Together Cohort groups 2-4. Group 2 are healthy preschool children, group 3 are preschool children with severe wheeze, and group 4 are school-aged asthmatics.

    mucosal-immunology-lab/BT_groups2-4_analysis’s past year of commit activity
    R 1 MIT 0 0 0 Updated Jan 15, 2024
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