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@mucosal-immunology-lab Mucosal Immunology Lab - Monash University, Melbourne AU

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    14 repositories

    • bioinformatics-hub

      Public
      This repository will aim to reformat our existing workflows into a more easily accessible format.
      HTML
      •
      MIT License
      •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • lcms-analysis

      Public
      Guide for processing and analysis of LCMS-derived metabolomics and lipidomics data.
      0•0•0•0•Updated Aug 13, 2024Aug 13, 2024

    • public_datasets

      Public
      Here we provide a list of publicly-available datasets that we have generated and uploaded to repositories.
      MIT License
      •0•0•0•0•Updated Aug 9, 2024Aug 9, 2024

    • nf-mucimmuno

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Jul 24, 2024Jul 24, 2024

    • elisa-analysis

      Public
      Analysis of ELISA results using 4-PL regression.
      MIT License
      •0•0•0•0•Updated Jun 26, 2024Jun 26, 2024

    • data_best_practices

      Public
      A guide to data storage best practices
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 18, 2024Jun 18, 2024

    • RNAseq_NFCORE

      Public
      Guide to using the nf-core/rnaseq pipeline on the MASSIVE cluster.
      MIT License
      •0•1•0•0•Updated May 21, 2024May 21, 2024

    • sequencing-data-submission

      Public
      A guide to submitting sequencing data to the National Center for Biotechnology Information (NCBI) sequencing read archive (SRA) database. Includes information on uploading data to the SRA using the high-speed Aspera Connect tool.
      MIT License
      •0•0•0•0•Updated Mar 13, 2024Mar 13, 2024

    • microbiome-analysis

      Public
      A selection of analytical approaches, tools, and utilities for the processing of microbiome data derived from either 16S rRNA amplicon sequencing or shotgun metagenomics.
      microbiomelimmamicrobiome-analysisphyloseq
      R
      •
      Other
      •0•2•0•0•Updated Feb 8, 2024Feb 8, 2024

    • BT_groups2-4_analysis

      Public
      The data processing and subsequent multi-omic integration and analysis pipeline utilised in analysis bronchial brush and bronchoalveolar lavage fluid from the Breathing Together Cohort groups 2-4. Group 2 are healthy preschool children, group 3 are preschool children with severe wheeze, and group 4 are school-aged asthmatics.
      R
      •
      MIT License
      •0•1•0•0•Updated Jan 15, 2024Jan 15, 2024

    • scRNAseq-STARsolo

      Public
      Analysis of scRNAseq data
      MIT License
      •0•1•0•0•Updated Nov 29, 2022Nov 29, 2022

    • autodock-gpu

      Public
      A guide for installation and running of small molecule binding prediction using the AutoDock-GPU tool.
      0•1•0•0•Updated Sep 20, 2022Sep 20, 2022

    • bacterial-database

      Public
      MIT License
      •0•0•0•0•Updated Sep 1, 2022Sep 1, 2022

    • metabolite-database

      Public
      A collection of information relating to metabolites and lipids, and their roles and functions in regards to mucosal immunology.
      MIT License
      •0•0•0•0•Updated Aug 18, 2022Aug 18, 2022