Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

DO NOT MERGE: Synonym sync: acronym case exception - build #677

Open
wants to merge 1 commit into
base: syn-sync-acronym-source-case
Choose a base branch
from

Conversation

joeflack4
Copy link
Contributor

@joeflack4 joeflack4 commented Oct 5, 2024

Build for:

Maybe this build isn't entirely necessary, given the simple changes of #671. But we are about done with this round of synonym sync and about to merge it, and it needs a build first. But this feature branch is still open, so I ought to build here instead.
We do however have some synony-related OMIM changes (monarch-initiative/omim#132) still yet to be merged. Not sure if we need to run a build on #93 when those changes are merged.

@joeflack4 joeflack4 marked this pull request as draft October 5, 2024 03:56
@joeflack4 joeflack4 self-assigned this Oct 5, 2024
@joeflack4 joeflack4 added the build Mostly for build PRs: when changes only to data files post `build-mondo-ingest`; no code changes label Oct 5, 2024
.gitignore Outdated Show resolved Hide resolved
@joeflack4 joeflack4 changed the base branch from main to syn-sync-acronym-source-case October 6, 2024 22:03
@joeflack4 joeflack4 force-pushed the syn-sync-acronym-source-case-build branch from ff606ee to 312389b Compare October 9, 2024 01:19
@joeflack4 joeflack4 marked this pull request as ready for review October 9, 2024 01:22
@joeflack4 joeflack4 force-pushed the syn-sync-acronym-source-case-build branch from 312389b to 14f04b9 Compare October 9, 2024 01:24
Copy link
Contributor Author

@joeflack4 joeflack4 left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

General review

Overall build LGTM!

New synonym sync outputs were ran recently before this build and are in the Google sheet. Those same outputs look good in this build.

Build stats
Build time was unusually high. About 7 hours. I haven't yet analyzed why that might be the case, though. I did notice that it seemed to be stuck on the synonym sync for Ordo for a bit, but IDK why that'd be the case. Normally the synonym sync Python scripts take about 45 seconds to complete for all sources. I might want to re-run part of / whole pipeline to sanity check performance. I wonder if my mac went to sleep at some point, though it shouldn't when it's plugged in.

@joeflack4 joeflack4 mentioned this pull request Nov 10, 2024
9 tasks
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
build Mostly for build PRs: when changes only to data files post `build-mondo-ingest`; no code changes
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant