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rebuild release files #359

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rebuild release files #359

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41801b3
rebuild release files
matentzn Aug 27, 2023
e75d35b
update release
matentzn Aug 30, 2023
63f09b6
update0902
matentzn Sep 3, 2023
5ec8dfc
updates
matentzn Sep 11, 2023
74532c5
another attemp
matentzn Sep 17, 2023
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2 changes: 1 addition & 1 deletion docs/metrics/doid.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/doid.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-08-19/doid.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-08-26/doid.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/gard.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/gard.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-08-19/gard.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-08-26/gard.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/icd10cm.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10cm.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-08-19/icd10cm.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-08-26/icd10cm.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/icd10who.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10who.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-08-19/icd10who.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-08-26/icd10who.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/ncit.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/ncit.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-08-19/ncit.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-08-26/ncit.owl

### Entities and axioms

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20 changes: 10 additions & 10 deletions docs/metrics/omim.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/omim.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-08-20/omim.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-08-26/omim.owl

### Entities and axioms

| Metric | Value |
| ------ | ----- |
| Annotation properties | 13 |
| Axioms | 347642 |
| Logical axioms | 36016 |
| Classes | 31451 |
| Axioms | 347785 |
| Logical axioms | 36036 |
| Classes | 31466 |
| Object properties | 6 |
| Data properties | 0 |
| Individuals | 0 |
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| Metric | Value |
| ------ | ----- |
| AnnotationAssertion | 280160 |
| Declaration | 31466 |
| SubClassOf | 36016 |
| AnnotationAssertion | 280268 |
| Declaration | 31481 |
| SubClassOf | 36036 |


#### Entity namespaces: axiom counts by namespace

| Metric | Value |
| ------ | ----- |
| prefix_unknown | 30006 |
| prefix_unknown | 30021 |
| oboInOwl | 3 |
| owl | 2 |
| xsd | 1 |
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| Metric | Value |
| ------ | ----- |
| Class | 103477 |
| ObjectSomeValuesFrom | 14185 |
| Class | 103532 |
| ObjectSomeValuesFrom | 14192 |


More information about the source can be found [in the documentation](../sources.md). The raw data (ontology metrics) can be found [on GitHub](https://github.com/monarch-initiative/mondo-ingest/tree/main/src/ontology/metadata).
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2 changes: 1 addition & 1 deletion docs/metrics/ordo.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/ordo.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-08-20/ordo.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-08-26/ordo.owl

### Entities and axioms

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6 changes: 3 additions & 3 deletions docs/reports/migrate.md
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# Migratable terms
| Ontology | Tot |
|:----------------------------------|:------|
| [DOID](./migrate_doid.md) | 95 |
| [DOID](./migrate_doid.md) | 96 |
| [GARD](./migrate_gard.md) | 9,370 |
| [ORDO](./migrate_ordo.md) | 3 |
| [NCIT](./migrate_ncit.md) | 2,113 |
| [ICD10WHO](./migrate_icd10who.md) | 119 |
| [ORDO](./migrate_ordo.md) | 110 |
| [OMIM](./migrate_omim.md) | 101 |
| [OMIM](./migrate_omim.md) | 110 |
| [ICD10CM](./migrate_icd10cm.md) | 1,889 |

### Codebook
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11 changes: 6 additions & 5 deletions docs/reports/migrate_doid.md
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| MONDO:0956997 | oligodendroglioma, idh-mutant and 1p/19q-codeleted, grade 3 | DOID:0081282 | MONDO:equivalentTo | oligodendroglioma, IDH-mutant and 1p/19q-codeleted, grade 3 | An IDH-mutant, and 1p/19q-codeleted oligodendroglioma that is characterized as grade 3 tumors associated with a more rapid growth. Grade 3 tumors appear to have abnormalities on chromosomes 9 or 10, along with unusual amounts of growth factors and proteins, which are thought to contribute to the more rapid growth of these gliomas. | MONDO:0859592 |
| MONDO:0957118 | bradyopsia 2 | DOID:0070364 | MONDO:equivalentTo | bradyopsia 2 | | MONDO:0012033 |
| MONDO:0957120 | nevoid basal cell carcinoma syndrome 2 | DOID:0070366 | MONDO:equivalentTo | nevoid basal cell carcinoma syndrome 2 | | MONDO:0007187 |
| MONDO:0957121 | leukoencephalopathy with vanishing white matter 5 | DOID:0070367 | MONDO:equivalentTo | leukoencephalopathy with vanishing white matter 5 | | MONDO:0011380 |
| MONDO:0957122 | leukoencephalopathy with vanishing white matter 4 | DOID:0070371 | MONDO:equivalentTo | leukoencephalopathy with vanishing white matter 4 | | MONDO:0011380 |
| MONDO:0957123 | leukoencephalopathy with vanishing white matter 3 | DOID:0070372 | MONDO:equivalentTo | leukoencephalopathy with vanishing white matter 3 | | MONDO:0011380 |
| MONDO:0957124 | leukoencephalopathy with vanishing white matter 2 | DOID:0070373 | MONDO:equivalentTo | leukoencephalopathy with vanishing white matter 2 | | MONDO:0011380 |
| MONDO:0957121 | leukoencephalopathy with vanishing white matter 5 | DOID:0070367 | MONDO:equivalentTo | leukoencephalopathy with vanishing white matter 5 | | MONDO:0800448 |
| MONDO:0957122 | leukoencephalopathy with vanishing white matter 4 | DOID:0070371 | MONDO:equivalentTo | leukoencephalopathy with vanishing white matter 4 | | MONDO:0800448 |
| MONDO:0957123 | leukoencephalopathy with vanishing white matter 3 | DOID:0070372 | MONDO:equivalentTo | leukoencephalopathy with vanishing white matter 3 | | MONDO:0800448 |
| MONDO:0957124 | leukoencephalopathy with vanishing white matter 2 | DOID:0070373 | MONDO:equivalentTo | leukoencephalopathy with vanishing white matter 2 | | MONDO:0800448 |
| MONDO:0957127 | developmental and epileptic encephalopathy 31b | DOID:0070376 | MONDO:equivalentTo | developmental and epileptic encephalopathy 31B | | MONDO:0100062|MONDO:0006025 |
| MONDO:0957181 | epidermolytic hyperkeratosis 2 | DOID:0081359 | MONDO:equivalentTo | epidermolytic hyperkeratosis 2 | An epidermolytic hyperkeratosis that is characterized by generalized erythema, erosions, scaling, and easily breaking blisters that become less frequent later in life, while hyperkeratosis increases and that has_material_basis_in heterozygous or homozygous mutation in the keratin-10 gene (KRT10) on chromosome 17q21. | MONDO:0007239 |
| MONDO:0957195 | digenic disease | DOID:0080578 | MONDO:equivalentTo | digenic disease | | |
Expand Down Expand Up @@ -99,4 +99,5 @@
| MONDO:0957522 | nemaline myopathy 5c | DOID:0081375 | MONDO:equivalentTo | nemaline myopathy 5C | A nemaline myopathy that has_material_basis_in autosomal dominant inheritance of a homozygous or compound heterozygous mutation in the TNNT1 gene on chromosome 19q13. | MONDO:0018958|MONDO:0000426 |
| MONDO:0957523 | sorbitol dehydrogenase deficiency with peripheral neuropathy | DOID:0081376 | MONDO:equivalentTo | sorbitol dehydrogenase deficiency with peripheral neuropathy | A neuromuscular disease that is characterized by onset of distal muscle weakness mainly affecting the lower limbs and resulting in difficulty walking and that has_material_basis_in homozygous or compound heterozygous mutation in the SORD gene on chromosome 15q21. | MONDO:0019056|MONDO:0006025 |
| MONDO:0957524 | cox deficiency, benign infantile mitochondrial myopathy | DOID:0081377 | MONDO:equivalentTo | COX deficiency, benign infantile mitochondrial myopathy | A cytochrome-c oxidase deficiency disease characterized by localization to tissues of the skeletal muscles. | MONDO:0009068 |
| MONDO:0957525 | kyphosis | DOID:4667 | MONDO:equivalentTo | kyphosis | | MONDO:0000836|MONDO:0000812 |
| MONDO:0957525 | kyphosis | DOID:4667 | MONDO:equivalentTo | kyphosis | | MONDO:0000836|MONDO:0000812 |
| MONDO:0957558 | li-fraumeni syndrome 1 | DOID:0111503 | MONDO:equivalentTo | Li-Fraumeni syndrome 1 | | MONDO:0018875 |
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