release20230622

monarch-initiative · Jun 23, 2023 · 5cafb3b · 5cafb3b
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diff --git a/docs/metrics/doid.md b/docs/metrics/doid.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/doid.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-18/doid.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-22/doid.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/gard.md b/docs/metrics/gard.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/gard.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-18/gard.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-22/gard.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/icd10cm.md b/docs/metrics/icd10cm.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10cm.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-18/icd10cm.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-22/icd10cm.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/icd10who.md b/docs/metrics/icd10who.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10who.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-18/icd10who.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-22/icd10who.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/ncit.md b/docs/metrics/ncit.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/ncit.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-18/ncit.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-22/ncit.owl
 
 ### Entities and axioms
 

diff --git a/docs/metrics/omim.md b/docs/metrics/omim.md
@@ -2,14 +2,14 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/omim.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-18/omim.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-22/omim.owl
 
 ### Entities and axioms
 
 | Metric | Value |
 | ------ | ----- |
 | Annotation properties | 13 |
-| Axioms | 371144 |
+| Axioms | 347180 |
 | Logical axioms | 35911 |
 | Classes | 31395 |
 | Object properties | 6 |
@@ -32,7 +32,7 @@
 
 | Metric | Value |
 | ------ | ----- |
-| AnnotationAssertion | 303823 |
+| AnnotationAssertion | 279859 |
 | Declaration | 31410 |
 | SubClassOf | 35911 |
 

diff --git a/docs/metrics/ordo.md b/docs/metrics/ordo.md
@@ -2,7 +2,7 @@
 
 **IRI:** http://purl.obolibrary.org/obo/mondo/sources/ordo.owl
 
-**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-18/ordo.owl
+**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2023-06-22/ordo.owl
 
 ### Entities and axioms
 

diff --git a/docs/reports/mapped_deprecated.md b/docs/reports/mapped_deprecated.md
@@ -2,11 +2,11 @@
 | Ontology                                    |   Tot deprecated in Mondo |
 |:--------------------------------------------|--------------------------:|
 | [OMIM](./mapped_deprecated_omim.md)         |                        44 |
-| [DOID](./mapped_deprecated_doid.md)         |                         4 |
 | [NCIT](./mapped_deprecated_ncit.md)         |                         3 |
 | [ORDO](./mapped_deprecated_ordo.md)         |                       113 |
 | [ICD10WHO](./mapped_deprecated_icd10who.md) |                         0 |
 | [ICD10CM](./mapped_deprecated_icd10cm.md)   |                         0 |
+| [DOID](./mapped_deprecated_doid.md)         |                         0 |
 | [GARD](./mapped_deprecated_gard.md)         |                         0 |
 
 `Ontology`: Name of ontology    

diff --git a/docs/reports/mapped_deprecated_ncit.md b/docs/reports/mapped_deprecated_ncit.md
@@ -5,36 +5,6 @@
 | mondo_id      | source_id            | source                   |
 |:--------------|:---------------------|:-------------------------|
 | ID            | A oboInOwl:hasDbXref | >A oboInOwl:source       |
-| MONDO:0002063 | NCIT:C6977           | MONDO:equivalentObsolete |
-| MONDO:0002274 | NCIT:C35878          | MONDO:equivalentObsolete |
-| MONDO:0002388 | NCIT:C4191           | MONDO:equivalentObsolete |
-| MONDO:0002598 | NCIT:C3753           | MONDO:equivalentObsolete |
-| MONDO:0002812 | NCIT:C27339          | MONDO:equivalentObsolete |
-| MONDO:0002813 | NCIT:C4501           | MONDO:equivalentObsolete |
-| MONDO:0003002 | NCIT:C2996           | MONDO:equivalentObsolete |
-| MONDO:0003333 | NCIT:C40012          | MONDO:equivalentObsolete |
-| MONDO:0003430 | NCIT:C7910           | MONDO:equivalentObsolete |
-| MONDO:0003495 | NCIT:C40092          | MONDO:equivalentObsolete |
-| MONDO:0003603 | NCIT:C4009           | MONDO:equivalentObsolete |
-| MONDO:0003604 | NCIT:C7047           | MONDO:equivalentObsolete |
-| MONDO:0003681 | NCIT:C4303           | MONDO:equivalentObsolete |
-| MONDO:0003723 | NCIT:C6941           | MONDO:equivalentObsolete |
-| MONDO:0003899 | NCIT:C27378          | MONDO:equivalentObsolete |
-| MONDO:0003937 | NCIT:C116779         | MONDO:equivalentObsolete |
 | MONDO:0003998 | NCIT:C40257          | MONDO:equivalentObsolete |
-| MONDO:0004212 | NCIT:C40288          | MONDO:equivalentObsolete |
-| MONDO:0004259 | NCIT:C28327          | MONDO:equivalentObsolete |
-| MONDO:0004538 | NCIT:C40202          | MONDO:equivalentObsolete |
-| MONDO:0005103 | NCIT:C4250           | MONDO:equivalentObsolete |
-| MONDO:0006096 | NCIT:C4654           | MONDO:equivalentObsolete |
-| MONDO:0006890 | NCIT:C3916           | MONDO:equivalentObsolete |
-| MONDO:0008189 | NCIT:C4383           | MONDO:equivalentObsolete |
-| MONDO:0009279 | NCIT:C131005         | MONDO:equivalentObsolete |
 | MONDO:0017308 | NCIT:C75007          | MONDO:equivalentObsolete |
-| MONDO:0019611 | NCIT:C8011           | MONDO:equivalentObsolete |
-| MONDO:0019927 | NCIT:C7911           | MONDO:equivalentObsolete |
-| MONDO:0020720 | NCIT:C123265         | MONDO:equivalentObsolete |
-| MONDO:0020842 | NCIT:C8998           | MONDO:equivalentObsolete |
-| MONDO:0024888 | NCIT:C4295           | MONDO:equivalentObsolete |
-| MONDO:0024889 | NCIT:C4294           | MONDO:equivalentObsolete |
-| MONDO:0045058 | NCIT:C7909           | MONDO:equivalentObsolete |
+| MONDO:0020842 | NCIT:C8998           | MONDO:equivalentObsolete |