Pass list of sequencing projects and analysis projects to GoldStudyTranslator call in generate_biosample_set_from_gold_api_for_study

[sujaypatil96]

The generate_biosample_set_from_gold_api_for_study job in data_records_stitching repository is responsible for creating a JSON file with biosamples of records from the GOLD study that are not already instantiated in the NMDC database. This takes as input the subsetted (do not exist in database) biosamples that need to be "processed" and pulls out certain attributes from it to populate slots on the Biosample class. Additionally, it also needs information about the associated sequencing projects and analysis projects from GOLD so it can comprehensively populate all the "mapped" slots on Biosample class.

Details

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Related issue(s)

Fixes #886

Related subsystem(s)

• Runtime API (except the Minter)
• Minter
• Dagster
• Project documentation (in the docs directory)
• Translators (metadata ingest pipelines)
• MongoDB migrations
• Other

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