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wdl
wdl PublicForked from openwdl/wdl
Workflow Description Language - Specification and Implementations
Java
1,413 contributions in the last year
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Contribution activity
March 2025
Created 12 commits in 3 repositories
Opened 5 pull requests in 4 repositories
ber-data/bertron-schema
2
merged
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GitHub action linkml docs
This contribution was made on Mar 8
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initial commit of linkml cookie cutter project
This contribution was made on Mar 7
microbiomedata/nmdc-schema
1
open
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Update metabolomics_analysis_acrtivity_has_calibration_data_object.js
This contribution was made on Mar 12
ber-data/bertron
1
closed
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Add github action to deploy schema documentation
This contribution was made on Mar 7
microbiomedata/mg_annotation
1
merged
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Update index.rst
This contribution was made on Mar 7
Reviewed 20 pull requests in 9 repositories
microbiomedata/nmdc_automation
8 pull requests
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Set shortRead to True and update unit test
This contribution was made on Mar 18
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429 implement tool to fix mal-formed urls
This contribution was made on Mar 14
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Updating import yaml files to fix fastq.gz.md5 import issues
This contribution was made on Mar 13
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Update Dockerfile to python 3.11
This contribution was made on Mar 11
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Pass input_files value as an array
This contribution was made on Mar 11
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Fix URL generation in run_import.py
This contribution was made on Mar 10
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190 implement stub JawsRunner
This contribution was made on Mar 7
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Add data generation ID to array in every case
This contribution was made on Mar 5
ber-data/bertron-schema
3 pull requests
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Base model for entities returned by BERtron search
This contribution was made on Mar 11
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Removing generated files from the repo
This contribution was made on Mar 11
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attempt to fix the docs generation issue
This contribution was made on Mar 11
microbiomedata/nmdc-runtime
2 pull requests
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Pass list of sequencing projects and analysis projects to
GoldStudyTranslatorcall ingenerate_biosample_set_from_gold_api_for_studyThis contribution was made on Mar 13 -
Account for multiple sequencing runs in NEON benthic water translator code
This contribution was made on Mar 4
microbiomedata/mg_annotation
2 pull requests
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Update to use img-annotation v5.3
This contribution was made on Mar 4
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Updating annotation workflows to run on Tahoma
This contribution was made on Mar 3
microbiomedata/ReadsQC
1 pull request
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Added memory and cpu to runtime
This contribution was made on Mar 18
ber-data/bertron
1 pull request
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Package scaffold
This contribution was made on Mar 7
microbiomedata/metaT_ReadsQC
1 pull request
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Updated CPUs to 16
This contribution was made on Mar 4
microbiomedata/issues
1 pull request
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Update ADR with system design for JAMO ingestion
This contribution was made on Mar 4
microbiomedata/ReadbasedAnalysis
1 pull request
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Update RBA workflows to run on Tahoma
This contribution was made on Mar 3
Created an issue in microbiomedata/nmdc-runtime that received 3 comments
endpoint for ingest of NMDC annotations into IMG
Is your feature request related to a problem? Please describe. IMG needs an endpoint which provides the following information. Use case 1 For a given
3
comments
Opened 10 other issues in 5 repositories
microbiomedata/issues
4
open
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EMP500 samples ingested in 2023 are missing collection date
This contribution was made on Mar 12
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Bioscales - staged data folder contains non-target data
This contribution was made on Mar 11
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workflow processing Kroeger - 36 metagenomes
This contribution was made on Mar 3
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ingest Kroeger data - 36 Metagenomes
This contribution was made on Mar 3
microbiomedata/nmdc_automation
3
closed
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Incorrect URLs for data objects
This contribution was made on Mar 10
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raw fastq data object files have a url that doesn't resolve
This contribution was made on Mar 10
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import automation in some cases picks up the md5 sum file instead of the fastq file
This contribution was made on Mar 10
microbiomedata/nmdc-schema
1
open
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deprecate
Metagenome Binspermissible valueThis contribution was made on Mar 17
microbiomedata/nmdc_api_utilities
1
closed
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process for updating nmdc_api_utilities
This contribution was made on Mar 11
microbiomedata/metaAssembly
1
open
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short read asesmbly inputs
This contribution was made on Mar 10