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Rename metadata txt files for Table S1 & S2, add note about Tables S1…
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… & S2 to Supplemental document, fix pdf spacing
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lossanna committed Jul 5, 2022
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33 changes: 21 additions & 12 deletions RMarkdown/Supplemental.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -16,9 +16,12 @@ library(metafor)
```

# Supplemental materials
Supplemental Figures S1-15 and Tables S3-9 for Ossanna & Gornish (2022), "Efficacy of labile carbon addition to reduce fast-growing, exotic invasive plants: A review and meta-analysis"
Supplemental materials for Ossanna & Gornish (2022), "Efficacy of labile carbon addition to reduce fast-growing, exotic invasive plants: A review and meta-analysis". \

## Table S3. Systematic review: Publication types
**Table S1 & S2. Raw data**
See accompanying Zenodo archive for Tables S1 & S2, and R Markdown documents detailing analysis and code. \

**Table S3. Systematic review: Publication types**
```{r}
peer$perc <- round(peer$perc, 1)
peer$peer <- c("conference", "doctoral dissertation", "peer-reviewed article", "technical report", "master's thesis")
Expand All @@ -29,7 +32,9 @@ peer %>%
kable_classic(full_width = FALSE, latex_options = "HOLD_position")
```

## Table S4. Systematic review: Study regions
\

**Table S4. Systematic review: Study regions**
```{r}
reg$perc <- round(reg$perc, 1)
colnames(reg) <- c("Region", "n", "Percent (%)")
Expand All @@ -49,7 +54,8 @@ hist(plot.na$plot, breaks = 50, xlab = expression(paste("Plot size (m"^2*")")),
```
**Figure S2.** Plot size for systematic review.

## Table S5. Systematic review: C types
\newpage
**Table S5. Systematic review: C types**
```{r}
ctypa$perc <- round(ctypa$perc, 1)
colnames(ctypa) <- c("C type", "n", "Percent (%)")
Expand All @@ -62,9 +68,11 @@ ctypa %>%
```{r, fig.height=5}
hist(cratav.na$cratav, breaks = 50, xlab = expression(paste("C rate (g C m"^-2*" y"^-1*")")), main = NULL)
```
**Figure S3.** Average C rate for systematic review.
**Figure S3.** Average C rate for systematic review. \

\

## Table S6. Systematic review: Number of treatment combinations with C addition
**Table S6.** Systematic review: Number of treatment combinations with C addition
```{r}
mtrtn$perc <- round(mtrtn$perc, 1)
mtrtn$mtrtn <- c("C addition only", "1 additional treatment", "2 additional treatments", "3 additional treatments")
Expand All @@ -75,7 +83,8 @@ mtrtn %>%
kable_classic(full_width = FALSE, latex_options = "HOLD_position")
```

## Table S7. Systematic review: Types of treatment combinations with C addition
\newpage
**Table S7. Systematic review: Types of treatment combinations with C addition**
```{r}
mtrt$perc <- round(mtrt$perc, 1)
colnames(mtrt) <- c("Additional treatments", "n", "Percent (%)")
Expand All @@ -85,7 +94,9 @@ mtrt %>%
kable_classic(full_width = FALSE, latex_options = "HOLD_position")
```

## Table S8. Systematic review: Inclusion of cost
\

**Table S8. Systematic review: Inclusion of cost**
```{r}
cost$perc <- round(cost$perc, 1)
cost$cost <- c("absent", "discussed in context of results", "mentioned briefly", "quantitative estimate")
Expand Down Expand Up @@ -207,10 +218,8 @@ forest.cat(nt, "plant_anper", nt.mv, nt.mv.panp, h)
```
**Figure S15.** Standardized mean Hedges’ *g* effect size $\pm$ 95% confidence interval (CI) for exotic (A) and native plant abundance (B) in response to C addition, categorized by plant duration (annual/perennial), with number of comparisons *k*. CIs that do not overlap zero are considered significant.




## Table S9. Meta-analysis: Heterogeneity statistics
\newpage
**Table S9. Meta-analysis: Heterogeneity statistics**
```{r}
hetero %>%
kbl(longtable = TRUE, booktabs = TRUE) %>%
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