Change exotic plant to exotic weed in figures

lossanna · Jul 5, 2022 · 5e408e5 · 5e408e5
1 parent b849253
commit 5e408e5
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Showing 12 changed files with 27 additions and 27 deletions.
diff --git a/RMarkdown/pub_main-figs.Rmd b/RMarkdown/pub_main-figs.Rmd
@@ -82,7 +82,7 @@ f1.df <- data.frame(model = c("Exotic", "Native"),
 ```{r, fig.height=7, fig.width=6}
 # Orchard plots
 f1.orc.ex <- orchard_plot(ex.mv.o, mod = "Int", xlab = "Effect size (Hedges' g)", transfm = "none") +
-  ggtitle("Exotic plant summary response") +
+  ggtitle("Exotic weed summary response") +
   annotate(geom = "text", x = -10, y = 1.4,
            label = paste0("Confidence interval: ", round(f1.df[1, 2], 3), ", ", round(f1.df[1, 3], 3), "***", "\n",
                           "Prediction interval: ", round(f1.df[1, 4], 3), ", ", round(f1.df[1, 5], 3)),
@@ -101,7 +101,7 @@ ggarrange(f1.orc.ex, f1.orc.nt,
 ```
 
 # Figure 2
-Figure 2 is a forest plot of exotic plant response by plant lifeform (annual/perennial and grass/forb/shrub).
+Figure 2 is a forest plot of exotic weed response by plant lifeform (annual/perennial and grass/forb/shrub).
 ```{r, eval=FALSE}
 # Exotic anpergfs model
 ex.mv.papgfs <- rma.mv(yi = yi,
@@ -136,11 +136,11 @@ forest(x = n.forest.ex.papgfs$x,
 par(cex = 0.75, font = 4)
 text(x = -1.3, y = 6, labels = "k")
 par(cex = 0.75, font = 2)
-text(x = 0, y = 6, labels = "Exotic plant response")
+text(x = 0, y = 6, labels = "Exotic weed response")
 ```
 
 # Figure 3
-Figure 3 is a forest plot of exotic plant response by study duration (months from first C app to harvest).
+Figure 3 is a forest plot of exotic weed response by study duration (months from first C app to harvest).
 ```{r, eval=FALSE}
 # Exotic dlc model
 ex.mv.dlc <- rma.mv(yi = yi,
@@ -171,11 +171,11 @@ forest(x = n.forest.ex.dlc$x,
 par(cex = 0.75, font = 4)
 text(x = -2.4, y = 11, labels = "k")
 par(cex = 0.75, font = 2)
-text(x = 0, y = 11, labels = "Exotic plant response")
+text(x = 0, y = 11, labels = "Exotic weed response")
 ```
 
 # Figure 4
-Figure 4 is a forest plot of exotic plant response by C application rate.
+Figure 4 is a forest plot of exotic weed response by C application rate.
 ```{r, eval=FALSE}
 # Exotic C rate models
 ex.cratc.na <- ex %>% 
@@ -217,7 +217,7 @@ text(x = -6.35, y = 16.1, labels = bquote(paste("(g C ", m^-2, " ", y^-1, ")")),
 par(cex = 0.75, font = 4)
 text(x = -4.7, y = 16.1, labels = "k")
 par(cex = 0.75, font = 2)
-text(x = 0, y = 16.1, labels = "Exotic plant response")
+text(x = 0, y = 16.1, labels = "Exotic weed response")
 ```
 
 # Figure 5

diff --git a/RMarkdown/pub_main-figs.html b/RMarkdown/pub_main-figs.html
diff --git a/output_figs/Figure_1.pdf b/output_figs/Figure_1.pdf
diff --git a/output_figs/Figure_1.tiff b/output_figs/Figure_1.tiff
diff --git a/output_figs/Figure_2.pdf b/output_figs/Figure_2.pdf
diff --git a/output_figs/Figure_2.tiff b/output_figs/Figure_2.tiff
diff --git a/output_figs/Figure_3.pdf b/output_figs/Figure_3.pdf
diff --git a/output_figs/Figure_3.tiff b/output_figs/Figure_3.tiff
diff --git a/output_figs/Figure_4.pdf b/output_figs/Figure_4.pdf
diff --git a/output_figs/Figure_4.tiff b/output_figs/Figure_4.tiff
diff --git a/output_figs/Orchard_ex.tiff b/output_figs/Orchard_ex.tiff
diff --git a/scripts/Main-figures.R b/scripts/Main-figures.R
@@ -20,7 +20,7 @@ f1.df <- data.frame(model = c("Exotic", "Native"),
 
 # Orchard plots
 f1.orc.ex <- orchard_plot(ex.mv.o, mod = "Int", xlab = "Effect size (Hedges' g)", transfm = "none") +
-  ggtitle("Exotic plant summary response") +
+  ggtitle("Exotic weed summary response") +
   annotate(geom = "text", x = -10, y = 1.4,
            label = paste0("Confidence interval: ", round(f1.df[1, 2], 3), ", ", round(f1.df[1, 3], 3), "***", "\n",
                           "Prediction interval: ", round(f1.df[1, 4], 3), ", ", round(f1.df[1, 5], 3)),
@@ -85,7 +85,7 @@ forest(x = n.forest.ex.papgfs$x,
 par(cex = 0.75, font = 4)
 text(x = -1.3, y = 6, labels = "k")
 par(cex = 0.75, font = 2)
-text(x = 0, y = 6, labels = "Exotic plant response")
+text(x = 0, y = 6, labels = "Exotic weed response")
 dev.off()
 
 tiff("output_figs/Figure_2.tiff", width = 6, height = 4, units = "in", res = 300)
@@ -104,7 +104,7 @@ forest(x = n.forest.ex.papgfs$x,
 par(cex = 0.75, font = 4)
 text(x = -1.3, y = 6, labels = "k")
 par(cex = 0.75, font = 2)
-text(x = 0, y = 6, labels = "Exotic plant response")
+text(x = 0, y = 6, labels = "Exotic weed response")
 dev.off()
 
 
@@ -131,7 +131,7 @@ forest(x = n.forest.ex.dlc$x,
 par(cex = 0.75, font = 4)
 text(x = -2.4, y = 11, labels = "k")
 par(cex = 0.75, font = 2)
-text(x = 0, y = 11, labels = "Exotic plant response")
+text(x = 0, y = 11, labels = "Exotic weed response")
 dev.off()
 
 tiff("output_figs/Figure_3.tiff", width = 6, height = 4, units = "in", res = 300)
@@ -150,7 +150,7 @@ forest(x = n.forest.ex.dlc$x,
 par(cex = 0.75, font = 4)
 text(x = -2.4, y = 11, labels = "k")
 par(cex = 0.75, font = 2)
-text(x = 0, y = 11, labels = "Exotic plant response")
+text(x = 0, y = 11, labels = "Exotic weed response")
 dev.off()
 
 
@@ -179,7 +179,7 @@ text(x = -6.55, y = 16.1, labels = bquote(paste("(g C ", m^-2, " ", y^-1, ")")),
 par(cex = 0.75, font = 4)
 text(x = -5, y = 16.1, labels = "k")
 par(cex = 0.75, font = 2)
-text(x = 0, y = 16.1, labels = "Exotic plant response")
+text(x = 0, y = 16.1, labels = "Exotic weed response")
 dev.off()
 
 tiff("output_figs/Figure_4.tiff", width = 6, height = 4, units = "in", res = 300)
@@ -201,7 +201,7 @@ text(x = -6.35, y = 16.1, labels = bquote(paste("(g C ", m^-2, " ", y^-1, ")")),
 par(cex = 0.75, font = 4)
 text(x = -4.7, y = 16.1, labels = "k")
 par(cex = 0.75, font = 2)
-text(x = 0, y = 16.1, labels = "Exotic plant response")
+text(x = 0, y = 16.1, labels = "Exotic weed response")
 dev.off()