-
Notifications
You must be signed in to change notification settings - Fork 2
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
resolves #113 #117
resolves #113 #117
Commits on Jun 21, 2024
-
Configuration menu - View commit details
-
Copy full SHA for dfc29e0 - Browse repository at this point
Copy the full SHA dfc29e0View commit details -
results(davis): gvpl_aflow with corrected hparams #90
Due to logic error in code previous results was just functioning as jus gvpl (no aflow). See 8c89a24.
Configuration menu - View commit details
-
Copy full SHA for cf077ae - Browse repository at this point
Copy the full SHA cf077aeView commit details -
Configuration menu - View commit details
-
Copy full SHA for 1c9c441 - Browse repository at this point
Copy the full SHA 1c9c441View commit details
Commits on Jun 25, 2024
-
Configuration menu - View commit details
-
Copy full SHA for 7027018 - Browse repository at this point
Copy the full SHA 7027018View commit details -
Configuration menu - View commit details
-
Copy full SHA for 76b8acf - Browse repository at this point
Copy the full SHA 76b8acfView commit details
Commits on Jun 26, 2024
-
Configuration menu - View commit details
-
Copy full SHA for 4152347 - Browse repository at this point
Copy the full SHA 4152347View commit details -
fix(tuned): davis_DG params + loader #90
To evaluate sequence length vs mse
Configuration menu - View commit details
-
Copy full SHA for 891a39c - Browse repository at this point
Copy the full SHA 891a39cView commit details
Commits on Jun 27, 2024
-
refactor(playground): prediction with tuned models moved to its own s…
…cript #90 For plotting sequence length vs mse
Configuration menu - View commit details
-
Copy full SHA for cf4f2e9 - Browse repository at this point
Copy the full SHA cf4f2e9View commit details
Commits on Jun 28, 2024
-
Configuration menu - View commit details
-
Copy full SHA for 42542a0 - Browse repository at this point
Copy the full SHA 42542a0View commit details -
Configuration menu - View commit details
-
Copy full SHA for d9f8091 - Browse repository at this point
Copy the full SHA d9f8091View commit details
Commits on Jul 2, 2024
-
results(GVPL_ESM): davis GVPL+esm performance #90
Underwhelming peformance, ESM didnt help at all with GVPL_aflow model
Configuration menu - View commit details
-
Copy full SHA for bd796de - Browse repository at this point
Copy the full SHA bd796deView commit details -
results(kiba): updated gvpL_aflow results #90
Accounting for error in aflow not being used.
Configuration menu - View commit details
-
Copy full SHA for 3b8b0a8 - Browse repository at this point
Copy the full SHA 3b8b0a8View commit details
Commits on Jul 3, 2024
-
Configuration menu - View commit details
-
Copy full SHA for f442919 - Browse repository at this point
Copy the full SHA f442919View commit details -
Configuration menu - View commit details
-
Copy full SHA for 9ac093f - Browse repository at this point
Copy the full SHA 9ac093fView commit details -
Configuration menu - View commit details
-
Copy full SHA for 2e61fd2 - Browse repository at this point
Copy the full SHA 2e61fd2View commit details -
Configuration menu - View commit details
-
Copy full SHA for cdf930f - Browse repository at this point
Copy the full SHA cdf930fView commit details -
fix(loader): init_dataset_object and splitting overlap issue #112 #113
Example usage: ```python #%% now based on this test set we can create the splits that will be used for all models # 5-fold cross validation + test set import pandas as pd from src import cfg from src.train_test.splitting import balanced_kfold_split from src.utils.loader import Loader test_df = pd.read_csv('/home/jean/projects/data/splits/davis_test_genes_oncoG.csv') test_prots = set(test_df.prot_id) db = Loader.load_dataset(f'{cfg.DATA_ROOT}/DavisKibaDataset/davis/nomsa_binary_original_binary/full/') #%% train, val, test = balanced_kfold_split(db, k_folds=5, test_split=0.1, val_split=0.1, test_prots=test_prots, random_seed=0, verbose=True ) #%% db.save_subset_folds(train, 'train') db.save_subset_folds(val, 'val') db.save_subset(test, 'test') ```
Configuration menu - View commit details
-
Copy full SHA for 765caf2 - Browse repository at this point
Copy the full SHA 765caf2View commit details
Commits on Jul 4, 2024
-
Configuration menu - View commit details
-
Copy full SHA for 0c43a7c - Browse repository at this point
Copy the full SHA 0c43a7cView commit details -
Configuration menu - View commit details
-
Copy full SHA for c47be94 - Browse repository at this point
Copy the full SHA c47be94View commit details -
Configuration menu - View commit details
-
Copy full SHA for ef0106c - Browse repository at this point
Copy the full SHA ef0106cView commit details -
Configuration menu - View commit details
-
Copy full SHA for c4c7741 - Browse repository at this point
Copy the full SHA c4c7741View commit details -
Configuration menu - View commit details
-
Copy full SHA for 099c3a3 - Browse repository at this point
Copy the full SHA 099c3a3View commit details -
Configuration menu - View commit details
-
Copy full SHA for b032b5b - Browse repository at this point
Copy the full SHA b032b5bView commit details
Commits on Jul 5, 2024
-
Configuration menu - View commit details
-
Copy full SHA for e80e225 - Browse repository at this point
Copy the full SHA e80e225View commit details -
Configuration menu - View commit details
-
Copy full SHA for c7fdc86 - Browse repository at this point
Copy the full SHA c7fdc86View commit details
Commits on Jul 6, 2024
-
Configuration menu - View commit details
-
Copy full SHA for 256563c - Browse repository at this point
Copy the full SHA 256563cView commit details
Commits on Jul 8, 2024
-
Configuration menu - View commit details
-
Copy full SHA for b15e83d - Browse repository at this point
Copy the full SHA b15e83dView commit details -
Configuration menu - View commit details
-
Copy full SHA for 20c9343 - Browse repository at this point
Copy the full SHA 20c9343View commit details -
Configuration menu - View commit details
-
Copy full SHA for 3fd9367 - Browse repository at this point
Copy the full SHA 3fd9367View commit details -
Configuration menu - View commit details
-
Copy full SHA for 69add71 - Browse repository at this point
Copy the full SHA 69add71View commit details -
Configuration menu - View commit details
-
Copy full SHA for 1361c7e - Browse repository at this point
Copy the full SHA 1361c7eView commit details
Commits on Jul 9, 2024
-
results(davis): retrained aflow models #113 due to issue #116
still need to train esm variants to complete #113 for davis
Configuration menu - View commit details
-
Copy full SHA for a0e4405 - Browse repository at this point
Copy the full SHA a0e4405View commit details