List of scripts for Oxford Nanopore sequencing data analysis, including:
- Dorado for barcode classification and basecalling.
- NanoPlot and FastQC for read statistics report.
- Porechop for adapters removal.
- BBMap for read quality filtering.
- Flye for read assembly.
- Medaka for assembly polishing.
- Quast for assembly statistics.
- CheckM for genome completeness estimation.
- SAMtools for genome coverage calculation.
- Mauve for genome reordering.
- Prokka for genome annotation.
- ABRicate for antimicrobial resistance screening.
- Roary for pangenome construction.