ONT_data_analysis v1.0

List of scripts for Oxford Nanopore sequencing data analysis, including:

• Dorado for barcode classification and basecalling.
• NanoPlot and FastQC for read statistics report.
• Porechop for adapters removal.
• BBMap for read quality filtering.
• Flye for read assembly.
• Medaka for assembly polishing.
• Quast for assembly statistics.
• CheckM for genome completeness estimation.
• SAMtools for genome coverage calculation.
• Mauve for genome reordering.
• Prokka for genome annotation.
• ABRicate for antimicrobial resistance screening.
• Roary for pangenome construction.