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Update ARM and ACTARM. #317

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merged 6 commits into from
Sep 28, 2024
Merged

Update ARM and ACTARM. #317

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b079041
Update ARM and ACTARM.
Sep 28, 2024
f775d7d
Merge branch 'main' into 315-refactor-adab
qiliu1013 Sep 28, 2024
ad527a6
[skip style] [skip vbump] Restyle files
github-actions[bot] Sep 28, 2024
e1605b4
Update R/radab.R
shajoezhu Sep 28, 2024
a498a28
update adab data
shajoezhu Sep 28, 2024
417e8ba
update snapshot
shajoezhu Sep 28, 2024
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8 changes: 8 additions & 0 deletions R/radab.R
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Original file line number Diff line number Diff line change
Expand Up @@ -386,6 +386,14 @@ radab <- function(adsl,
last_ada
))

# Carry over ARM and ACTARM for all records.
arm <- adab %>%
filter(!is.na(ARM), !is.na(ACTARM)) %>%
select(USUBJID, ARM, ACTARM) %>%
distinct(.)
adab$ARM <- arm$ARM[match(adab$USUBJID, arm$USUBJID)]
adab$ACTARM <- arm$ACTARM[match(adab$USUBJID, arm$USUBJID)]

if (length(na_vars) > 0 && na_percentage > 0) {
adab <- mutate_na(ds = adab, na_vars = na_vars, na_percentage = na_percentage)
}
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50 changes: 25 additions & 25 deletions tests/testthat/_snaps/row_values.md
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Expand Up @@ -4698,24 +4698,24 @@
6 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X 24H 1.08
7 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X Predose 1
8 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X 24H 1
9 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 1
10 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 0
11 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 0
12 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 1
13 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 1
14 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 0
15 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 0
16 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 1
17 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 1
18 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 1
19 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 0
20 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 0
21 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 1
22 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 0
23 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 1
24 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 1
25 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 0
26 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 0.143
9 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 1
10 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 0
11 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 0
12 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 1
13 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 1
14 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 0
15 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 0
16 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 1
17 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 1
18 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 1
19 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 0
20 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 0
21 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 1
22 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 0
23 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 1
24 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 1
25 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 0
26 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 0.143
AVALC AVALU
<chr> <fct>
1 POSITIVE "titer"
Expand Down Expand Up @@ -4837,16 +4837,16 @@
# A tibble: 10 x 21
STUDYID USUBJID ARM ACTARM ISTPT AVAL
<chr> <chr> <fct> <fct> <fct> <dbl>
1 AB12345 AB12345-USA-13-id-3 <NA> <NA> <NA> 0
1 AB12345 AB12345-USA-13-id-3 A: Drug X A: Drug X <NA> 0
2 AB12345 AB12345-CHN-3-id-5 A: Drug X A: Drug X 24H NA
3 AB12345 AB12345-BRA-9-id-8 <NA> <NA> <NA> 1
3 AB12345 AB12345-BRA-9-id-8 A: Drug X A: Drug X <NA> 1
4 AB12345 AB12345-CHN-11-id-1 C: Combination C: Combination 24H NA
5 AB12345 AB12345-BRA-9-id-8 <NA> <NA> <NA> 0
5 AB12345 AB12345-BRA-9-id-8 A: Drug X A: Drug X <NA> 0
6 AB12345 AB12345-CHN-3-id-5 A: Drug X A: Drug X Predose 1
7 AB12345 AB12345-BRA-1-id-9 <NA> <NA> <NA> 0.143
8 AB12345 AB12345-CHN-11-id-1 <NA> <NA> <NA> 0
9 AB12345 AB12345-USA-13-id-3 <NA> <NA> <NA> 1
10 AB12345 AB12345-JPN-4-id-7 <NA> <NA> <NA> 1
7 AB12345 AB12345-BRA-1-id-9 C: Combination C: Combination <NA> 0.143
8 AB12345 AB12345-CHN-11-id-1 C: Combination C: Combination <NA> 0
9 AB12345 AB12345-USA-13-id-3 A: Drug X A: Drug X <NA> 1
10 AB12345 AB12345-JPN-4-id-7 A: Drug X A: Drug X <NA> 1
AVALC AVALU PARAM
<chr> <fct> <fct>
1 N "" Treatment enhanced ADA, Neutralizing Antibody
Expand Down
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