MSnbase is an R/Bioconductor package that provides infrastructure
for plotting, data manipulation and processing of MS-based proteomics
data. The project was started by
Laurent Gatto in October 2010 (Mon Oct 4
23:35:23 2010, according to the git log) and has, since then,
benefited from various contributions.
Laurent Gatto with contributions from
Guangchuang Yu, Samuel Wieczorek, Vasile-Cosmin Lazar,
Vladislav Petyuk, Thomas Naake, Richie Cotton, Martina Fisher,
Johannes Rainer and Sebastian Gibb.
The official page is the Bioconductor landing page (release or devel versions). The github page page is for sharing, testing, issue tracking and forking/pulling purposes. The Bioconductor svn server, is the official repository for the working source code.
To install MSnbase
library("BiocInstaller")
biocLite("MSnbase")If you need the github version
biocLite("lgatto/MSnbase")
General questions should be asked on the
Bioconductor support forum, using
MSnbase to tag the question.
To cite the MSnbase package in publications, please use:
Gatto L, Lilley KS.
MSnbase- an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation. Bioinformatics. 2012 Jan 15;28(2):288-9. doi:10.1093/bioinformatics/btr645. Epub 2011 Nov 22. PubMed PMID:22113085.
Contributions to the package are more than welcome. If you want to
contribute to this package, you should follow the same conventions as
the rest of the functions whenever it makes sense to do so. Feel free
to get in touch (preferable opening a
github issue) to discuss
any suggestions. The
MSnbase development vignette
gives some background on the class infrastructure.
Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.