DESCRIPTION

Package: MSnbase
Title: Base Functions and Classes for MS-based Proteomics
Version: 2.1.3
Description: Basic plotting, data manipulation and processing
	     of MS-based Proteomics data.
Authors@R: c(person(given = "Laurent", family = "Gatto",
	            email = "lg390@cam.ac.uk",
 		    role = c("aut","cre")),
             person(given = "Guangchuang", family ="Yu",
	            email = "guangchuangyu@gmail.com",
		    role = "ctb"),
             person(given = "Samuel", family ="Wieczorek",
	            email = "samuel.wieczorek@cea.fr",
		    role = "ctb"),
             person(given = "Vasile-Cosmin", family ="Lazar",
	            email = "v.cosmin.lazar@googlemail.com",
		    role = "ctb"),
             person(given = "Vladislav", family ="Petyuk",
	            email = "petyuk@gmail.com",
		    role = "ctb"),
             person(given = "Thomas", family ="Naake",
                    email = "tn299@cam.ac.uk",
                    role = "ctb"),
             person(given = "Richie", family ="Cotton",
	            email = "richierocks@gmail.com",
		    role = "ctb"),
             person(given = "Martina", family ="Fischer",
	            email = "FischerM@rki.de",
		    role = "ctb"),
             person(given = "Johannes", family ="Rainer",
	            email = "Johannes.Rainer@eurac.edu",
		    role = "ctb"),
             person(given = "Gibb", family ="Sebastian",
	            email = "mail@sebastiangibb.de",
		    role = "ctb"))
Author: Laurent Gatto <lg390@cam.ac.uk> with contributions from
	Guangchuang Yu, Samuel Wieczorek, Vasile-Cosmin Lazar,
	Vladislav Petyuk, Thomas Naake, Richie Cotton, Martina Fisher,
	Johannes Rainer	and Sebastian Gibb.
Maintainer: Laurent Gatto <lg390@cam.ac.uk>
Depends:
    R (>= 3.1),
    methods,
    BiocGenerics (>= 0.7.1),
    Biobase (>= 2.15.2),
    mzR (>= 2.7.6),
    BiocParallel,
    ProtGenerics (>= 1.5.1)
Imports:
    plyr,
    IRanges,
    preprocessCore,
    vsn,
    grid,
    reshape2,
    stats4,
    affy,
    impute,
    pcaMethods,
    mzID (>= 1.5.2),
    MALDIquant (>= 1.12),
    digest,
    lattice,
    ggplot2,
    S4Vectors,
    XML,
    Rcpp
Suggests:
    testthat,
    pryr,
    gridExtra,
    microbenchmark,
    zoo,
    knitr (>= 1.1.0),
    rols,
    Rdisop,
    pRoloc,
    pRolocdata (>= 1.7.1),
    msdata (>= 0.12.2),
    roxygen2,
    rgl,
    rpx,
    AnnotationHub,
    BiocStyle,
    rmarkdown,
    imputeLCMD,
    norm,
    gplots,
    shiny
LinkingTo: Rcpp
License: Artistic-2.0
LazyData: yes
VignetteBuilder: knitr
BugReports: https://github.com/lgatto/MSnbase/issues
URL: https://github.com/lgatto/MSnbase
biocViews: Infrastructure, Proteomics, MassSpectrometry,
	   QualityControl, DataImport
RoxygenNote: 5.0.1