1.2

Added

• Added Gibson & Bruck's NextReactionMethod
• Added Cao et al's tau leaping method in stocal.experimental.tauleap
• Added statistical validation suite in stocal.examples.validation and stocal.samples.dsmts
• Added modular trajectory sampling interface stocal.experimental.samplers
• Added flattening of rule-based processes into static processes
• StochasticSimulationAlgorithm instances accept an optional random seed

Deprecated

• Deprecated AndersonNRM in favour of AndersonMethod
• Deprecated TrajectorySampler in favour of StochasticSimulationAlgorithm
• Deprecated ReactionRule in favour of TransitionRule
• Deprecated Process.trajectory in favour of Process.sample

Changed

• TrajectorySampler instances now use an internal random number generator (sampler.rng) rather than python's global one.
• Improved performance of DirectMethod and AndersonMethod
• Improved performance of transition inference in TransitionRule

1.1.2

Fixed

• Fixed issue #1 in Event.next_occurrence
• Fixed issue #2 in ReactionRule.infer_transitions
• Fixed issue with printing transitions with non-string reactants
• Fixed issue #3 in AndersonNRM
• Fixed issue #4 in FirstReactionMethod

Added

• Added type support of reaction rules via ReactionRule.signature
• Added support for time dependent reaction rates

Changed

• ReactionRule.Transition can alternatively be specified through return type annotation in python3
• MassAction.__repr__ now also prints rate constant
• stocal.examples.type_rules now does what it claims to do
• Events that occurr at tmax are now explicitly included in a trajectory

1.0.2

Fixed

• Fixed error in tutorial

Added

• Added python3 compatibility

Deprecated

• Deprecated dict support of several functions in favor of multisets
• Deprecated some method parameter names

Removed

• Removed requirement for ReactionRule.order

Changed

• Changed package organization