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FAQ
Scott Hazelhurst edited this page Jun 9, 2017
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- When I run the pipeline, it fails and I see the error.
Command error: Traceback (most recent call last): File ".command.sh", line 19, in from subprocess import check_output, CalledProcessError ImportError: cannot import name check_output
You need to be running Python 2.7 as your default version of Python
About h3aGWAS
Getting started
Running pipelines
- Quick Start
- The nextflow config file
- Pipeline options
- The Pipelines
- Affy Calling
- Converting from Illumina Top-Bottom
- PLINK QC pipeline
- Association testing pipeline
- Post-GWAS analysis
Extending pipelines
Getting help