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Affy Calling
Your Name edited this page May 16, 2017
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This pipeline does SNP calling of Affymetrix CEL files and produces PLINK files.
About h3aGWAS
Getting started
Running pipelines
- Quick Start
- The nextflow config file
- Pipeline options
- The Pipelines
- Affy Calling
- Converting from Illumina Top-Bottom
- PLINK QC pipeline
- Association testing pipeline
- Post-GWAS analysis
Extending pipelines
Getting help