v1.2

We updated the format for the reference bed file containing information about regions. Previously columns for the bed file had the following format:

CHROM | START | END | MOTIF_LEN | NUM_COPY | NAME

now we removed the motif length and the number of copies to replace it with the motif sequence as follows:

CHROM | START | END | MOTIF | NAME

Please refer to the tool's documentation for more details and an example of a valid reference file.

v1.1

LongTR now supports custom sequence alignment parameters via the --alignment-params option. For a more detailed explanation of this new feature and how to utilize it, please refer to the tool's documentation.

v1.0

First release of LongTR.