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If you find composer packages missing on the server, make sure they're not installed as submodules or subtrees or what have you.
They're a gnarly pain in the ass and since we can't guarantee the availability of composer on the web server, it's just not for us.
composer
You can install Composer packages with the --prefer-dist flag to get a copy in your repo.
--prefer-dist
composer update --prefer-dist
That should do it.