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Update hmm.py, make the window paramter activate of segment_hmm function #835

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Aug 15, 2023
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Update hmm.py, make the window paramter activate of segment_hmm function #835

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2 changes: 1 addition & 1 deletion cnvlib/segmentation/hmm.py
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Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,7 @@ def segment_hmm(cnarr, method, diploid_parx_genome, window=None, variants=None,
# NB: Incorporate weights into smoothed log2 estimates
# (Useful kludge until weighted HMM is in place)
orig_log2 = cnarr["log2"].values.copy()
cnarr["log2"] = cnarr.smooth_log2() # window)
cnarr["log2"] = cnarr.smooth_log2(window)

logging.info("Building model from observations")
model = hmm_get_model(cnarr, method, diploid_parx_genome, processes)
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