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Update to new specsim api#3

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NobleKennamer wants to merge 20 commits intomasterdkirkby/bayez:masterfrom update_specsim_apidkirkby/bayez:update_specsim_apiCopy head branch name to clipboard

+244-297

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Commits on May 10, 2016

• Initial Commit: Added some comments on what should be changes

  NobleKennamer

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• Changed how the specsim simulator is created from bayez

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• Using the simulator object to access details of the simulation

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Commits on May 11, 2016

• Rewrote init of simulation to use ccd_slices instead of computing start and stop of pixels

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Commits on May 12, 2016

• Finished updating init and make_vector method, but there could be a cleaner way of doing it

  NobleKennamer

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• Finished updating the simulate method, but there are still quite a few questions in regards to api change

  NobleKennamer

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• Adding some initial comments for what needs to be updated in desi_bayez

  NobleKennamer

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• making some suggestions on how the final code should be updated for simulation.py

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Commits on May 13, 2016

• Finished updating simulation.py to work with new specsim api

  NobleKennamer

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• Bug when building priors: Inputs have invalid or missing units. See the BayezExample notebook for more details

  NobleKennamer

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• Fixed unit issue in a Kludgey way. New update_out not yet called after update_in to deal with now

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Commits on May 14, 2016

• Fixed update_out bug now workining on new bug

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• Fixed the downsampling bug

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• Ipython Kernal keeps dying when estimate_batch is called. Not sure why

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• The dying kernal bug apperas to be happening inside the for loop of estimate.run(..) on iteration 39369

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Commits on May 31, 2016

• All my changes up to the memory issue

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Commits on Jun 9, 2016

• Figured out infinite sum bug. Clean up code. Update is pretty much update except for desi_bayez

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Commits on Jul 6, 2016

• Updated sampler.py for v2.2 templates

  

  Javier S

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• Updated desi_bayez

  

  Javier S

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Commits on Jul 7, 2016

• Adding desi_bayez back into init

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