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47 Open 197 Closed
47 Open 197 Closed
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Issues list

PEPATACr.R now gives error with upgraded R dependencies
#291 opened Oct 7, 2024 by donaldcampbelljr
Unable to access jarfile PE
#290 opened Oct 7, 2024 by sunta3iouxos
7
problem opening file: -B in preseq with ./configure --enable-hts option awaiting-response Waiting for response from original poster
#280 opened Apr 24, 2024 by h20gg702
@nsheff
4
The production of *peaks_rmBlacklist.narrowPeak files
#279 opened Mar 21, 2024 by tan200000000
1
collapsePeaks fails during project level execution of tutorial
#278 opened Mar 20, 2024 by DavideBrex
NameError: name '_LOGGER' is not defined
#266 opened Jan 17, 2024 by atraunbauer
4
problem rerun using looper and Error in opt_get_verb() -- solved likely-solved
#262 opened Jan 9, 2024 by miximimi
@donaldcampbelljr
3
Run PEPATAC on a PEP on PEPHUB
#260 opened Dec 12, 2023 by donaldcampbelljr
@donaldcampbelljr
There are still overlapping peaks in the *_peaks_normalized.narrowPeak file for samples and in produced consensus peak set for project
#253 opened Oct 30, 2023 by yqlan
How to set my own adapter file?
#252 opened Oct 19, 2023 by yqlan
how can i run looper run without creating env variable '$REFGENIE'
#251 opened Oct 4, 2023 by yqlan
@donaldcampbelljr
2
Not remove duplicates
#249 opened Sep 3, 2023 by gbloeb
PEPATAC with looper failed with the latest looper and eido
#246 opened Jul 24, 2023 by xuebingjie1990
@donaldcampbelljr
5
There’s NO JAVA in docker image
#243 opened May 17, 2023 by victorwang123
About Run PEPATAC in a container
#242 opened May 17, 2023 by victorwang123
Error installing PEPATAC in conda environment || PackageNotFound
#239 opened Apr 5, 2023 by unikill066
1
lock file Problem
#238 opened Mar 26, 2023 by AnthonyPhosphate
1
tutorial to run from singularity is failing with this error:The following required tool(s) are not callable: macs2
#237 opened Mar 5, 2023 by bioarpit1
2
Problem in creating consensus ATAC peaks
#236 opened Mar 2, 2023 by gauriprasad08
3
TSSE score appropriate cutoff
#235 opened Feb 25, 2023 by ksmtnals90
Fastq filter_paired_fq.pl function did not complete successfully
#234 opened Feb 17, 2023 by ksmtnals90
columns in ref_peaks_coverage.bed
#233 opened Nov 7, 2022 by cristanchoa
1
Error at "TSS distance distribution" step
#232 opened Nov 2, 2022 by marta-nazzari
Issue submitting samples with alternate genomes
#231 opened Oct 26, 2022 by rylanci
5
hg38 not exported object from namespace:GenomicDistributionsData
#230 opened Oct 21, 2022 by kloot
2
ProTip! Follow long discussions with comments:>50.