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Hi,
I have an issue when running the pipeline at the step "TSS distance distribution" step.
Namely, the test_sample_peaks_partition_dist.pdf file is not created, possibly because the wrong path for saving is indicated. The pipeline continues executing without crashing.
This is the code snippet in question as it appears in the terminal:
> `TSS distance distribution` QC_GRCm39/test_sample_mouse_peak_TSS_distribution.pdf TSS distance distribution QC_GRCm39/test_sample_mouse_peak_TSS_distribution.png PEPATAC _OBJ_
Target to produce: `/home/TEST_PEPATAC/test_sample_mouse/QC_GRCm39/test_sample_mouse_peak_genomic_distribution.pdf`
> `Rscript /home/pepatac/tools/PEPATAC.R anno -p genomic -i /home/TEST_PEPATAC/test_sample_mouse/peak_calling_GRCm39/test_sample_mouse_peaks.narrowPeak -f /home/TEST_PEPATAC/test_sample_mouse/raw/GRCm39_annotations.bed -g GRCm39 -o /home/TEST_PEPATAC/test_sample_mouse/QC_GRCm39/test_sample_mouse_peak_genomic_distribution.pdf` (25612)
<pre>
touch: cannot touch '/home/TEST_PEPATAC/test_sample_mouse/QC_GRCm39/test_sample_mouse_peak_genomic_distribution.pdf/test_sample_peaks_partition_dist.pdf': No such file or directory
The text was updated successfully, but these errors were encountered:
Hi,
I have an issue when running the pipeline at the step "TSS distance distribution" step.
Namely, the
test_sample_peaks_partition_dist.pdf
file is not created, possibly because the wrong path for saving is indicated. The pipeline continues executing without crashing.This is the code snippet in question as it appears in the terminal:
The text was updated successfully, but these errors were encountered: