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Fix t_idx and additional channels #134

Merged
merged 17 commits into from
Jul 2, 2024
Merged

Fix t_idx and additional channels #134

merged 17 commits into from
Jul 2, 2024

Commits on Jun 30, 2024

  1. fixing the t_idx issue that should enumerate

    @edyoshikun
    edyoshikun committed Jun 30, 2024
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  2. shouldve used zip instad of itertools.product

    @edyoshikun
    edyoshikun committed Jun 30, 2024
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  3. make estimate affine show the registration.

    @edyoshikun
    edyoshikun committed Jun 30, 2024
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  4. adding similarity transform as an option to do (xyx scale,rot,translate)

    @edyoshikun
    edyoshikun committed Jun 30, 2024
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  5. reverting utils to main

    @edyoshikun
    edyoshikun committed Jun 30, 2024
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  6. re-adding the t_idx_out

    @edyoshikun
    edyoshikun committed Jun 30, 2024
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  7. fixing case when dataset is 2D 

    updating docstring for CLI using similarity vs euclidian
    @edyoshikun
    edyoshikun committed Jun 30, 2024
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  8. fixing bug in lir box calculation. Used the wrong axis.

    @edyoshikun
    edyoshikun committed Jun 30, 2024
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  9. adding a fix to when we provide a list of time_indeces to process.

    @edyoshikun
    edyoshikun committed Jun 30, 2024
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  10. replacing itertool.product with zip

    @edyoshikun
    edyoshikun committed Jun 30, 2024
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  11. ruff flake8

    @edyoshikun
    edyoshikun committed Jun 30, 2024
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  12. - fixing bug when source and target channels are the same. 

    - removing extra parameters not used
-support for 2D and 3D
-renaming flag for similarity-> similarity
    @edyoshikun
    edyoshikun committed Jun 30, 2024
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Commits on Jul 1, 2024

  1. adding notes for the Z LIR estimation. Note: this assumes the center … 

    …is representative of volume's LIR.
    @edyoshikun
    edyoshikun committed Jul 1, 2024
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  2. fix apply_affine. it requires the original xyz size as input not the … 

    …cropped zyx.
    @edyoshikun
    edyoshikun committed Jul 1, 2024
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  3. cherrypicking commits to fix utils.py

    @edyoshikun
    edyoshikun committed Jul 1, 2024
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Commits on Jul 2, 2024

  1. rename target_original_shape

    @ieivanov
    ieivanov committed Jul 2, 2024
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  2. move parallel pool

    @ieivanov
    ieivanov committed Jul 2, 2024
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