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release #1

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Commits on Oct 23, 2022

  1. [DATALAD RUNCMD] fMRIPrep_sub-05/ses-001 

    === Do not change lines below ===
{
 "chain": [],
 "cmd": "containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.5.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-cneuromod.mario_sub-05_ses-001_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license --resource-monitor sourcedata/cneuromod.mario ./ participant",
 "dsid": "c1c43979-a83d-42b7-9508-4fface179af8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.5.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/cneuromod.mario/sub-05/ses-001/fmap/",
  "sourcedata/cneuromod.mario/sub-05/ses-001/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
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  2. [DATALAD RUNCMD] fMRIPrep_sub-05/ses-006 

    === Do not change lines below ===
{
 "chain": [],
 "cmd": "containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.5.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-cneuromod.mario_sub-05_ses-006_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license --resource-monitor sourcedata/cneuromod.mario ./ participant",
 "dsid": "c1c43979-a83d-42b7-9508-4fface179af8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.5.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/cneuromod.mario/sub-05/ses-006/fmap/",
  "sourcedata/cneuromod.mario/sub-05/ses-006/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
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  3. [DATALAD RUNCMD] fMRIPrep_sub-05/ses-004 

    === Do not change lines below ===
{
 "chain": [],
 "cmd": "containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.5.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-cneuromod.mario_sub-05_ses-004_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license --resource-monitor sourcedata/cneuromod.mario ./ participant",
 "dsid": "c1c43979-a83d-42b7-9508-4fface179af8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.5.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/cneuromod.mario/sub-05/ses-004/fmap/",
  "sourcedata/cneuromod.mario/sub-05/ses-004/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
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Commits on Oct 25, 2022

  1. append session entity to report to avoid name collision

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  2. append session entity to report to avoid name collision

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  3. append session entity to report to avoid name collision

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  4. append session entity to report to avoid name collision

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  105. Merge branch 'fmriprep_study-cneuromod.mario_sub-01_ses-002.job' into… 

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Commits on Oct 27, 2022

  1. [DATALAD RUNCMD] fMRIPrep_sub-05/ses-010 

    === Do not change lines below ===
{
 "chain": [],
 "cmd": "containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.5.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-cneuromod.mario_sub-05_ses-010_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license --resource-monitor sourcedata/cneuromod.mario ./ participant",
 "dsid": "c1c43979-a83d-42b7-9508-4fface179af8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.5.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/cneuromod.mario/sub-05/ses-010/fmap/",
  "sourcedata/cneuromod.mario/sub-05/ses-010/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
    @bpinsard
    bpinsard committed Oct 27, 2022
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  2. [DATALAD RUNCMD] fMRIPrep_sub-05/ses-011 

    === Do not change lines below ===
{
 "chain": [],
 "cmd": "containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.5.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-cneuromod.mario_sub-05_ses-011_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license --resource-monitor sourcedata/cneuromod.mario ./ participant",
 "dsid": "c1c43979-a83d-42b7-9508-4fface179af8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.5.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/cneuromod.mario/sub-05/ses-011/fmap/",
  "sourcedata/cneuromod.mario/sub-05/ses-011/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
    @bpinsard
    bpinsard committed Oct 27, 2022
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  3. [DATALAD RUNCMD] fMRIPrep_sub-05/ses-014 

    === Do not change lines below ===
{
 "chain": [],
 "cmd": "containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.5.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-cneuromod.mario_sub-05_ses-014_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license --resource-monitor sourcedata/cneuromod.mario ./ participant",
 "dsid": "c1c43979-a83d-42b7-9508-4fface179af8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.5.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/cneuromod.mario/sub-05/ses-014/fmap/",
  "sourcedata/cneuromod.mario/sub-05/ses-014/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
    @bpinsard
    bpinsard committed Oct 27, 2022
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  4. [DATALAD RUNCMD] fMRIPrep_sub-06/ses-011 

    === Do not change lines below ===
{
 "chain": [],
 "cmd": "containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.5.sing -w ./workdir --participant-label 06 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-cneuromod.mario_sub-06_ses-011_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license --resource-monitor sourcedata/cneuromod.mario ./ participant",
 "dsid": "c1c43979-a83d-42b7-9508-4fface179af8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.5.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/cneuromod.mario/sub-06/ses-011/fmap/",
  "sourcedata/cneuromod.mario/sub-06/ses-011/func/",
  "sourcedata/smriprep/sub-06/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-06/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
    @bpinsard
    bpinsard committed Oct 27, 2022
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  5. [DATALAD RUNCMD] fMRIPrep_sub-02/ses-012 

    === Do not change lines below ===
{
 "chain": [],
 "cmd": "containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.5.sing -w ./workdir --participant-label 02 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-cneuromod.mario_sub-02_ses-012_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license --resource-monitor sourcedata/cneuromod.mario ./ participant",
 "dsid": "c1c43979-a83d-42b7-9508-4fface179af8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.5.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/cneuromod.mario/sub-02/ses-012/fmap/",
  "sourcedata/cneuromod.mario/sub-02/ses-012/func/",
  "sourcedata/smriprep/sub-02/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-02/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
    @bpinsard
    bpinsard committed Oct 27, 2022
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  6. [DATALAD RUNCMD] fMRIPrep_sub-05/ses-013 

    === Do not change lines below ===
{
 "chain": [],
 "cmd": "containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.5.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-cneuromod.mario_sub-05_ses-013_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license --resource-monitor sourcedata/cneuromod.mario ./ participant",
 "dsid": "c1c43979-a83d-42b7-9508-4fface179af8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.5.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/cneuromod.mario/sub-05/ses-013/fmap/",
  "sourcedata/cneuromod.mario/sub-05/ses-013/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
    @bpinsard
    bpinsard committed Oct 27, 2022
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  7. [DATALAD RUNCMD] fMRIPrep_sub-05/ses-016 

    === Do not change lines below ===
{
 "chain": [],
 "cmd": "containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.5.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-cneuromod.mario_sub-05_ses-016_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license --resource-monitor sourcedata/cneuromod.mario ./ participant",
 "dsid": "c1c43979-a83d-42b7-9508-4fface179af8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.5.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/cneuromod.mario/sub-05/ses-016/fmap/",
  "sourcedata/cneuromod.mario/sub-05/ses-016/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
    @bpinsard
    bpinsard committed Oct 27, 2022
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  8. [DATALAD RUNCMD] fMRIPrep_sub-05/ses-015 

    === Do not change lines below ===
{
 "chain": [],
 "cmd": "containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.5.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-cneuromod.mario_sub-05_ses-015_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license --resource-monitor sourcedata/cneuromod.mario ./ participant",
 "dsid": "c1c43979-a83d-42b7-9508-4fface179af8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.5.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/cneuromod.mario/sub-05/ses-015/fmap/",
  "sourcedata/cneuromod.mario/sub-05/ses-015/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
    @bpinsard
    bpinsard committed Oct 27, 2022
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  9. [DATALAD RUNCMD] fMRIPrep_sub-05/ses-012 

    === Do not change lines below ===
{
 "chain": [],
 "cmd": "containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.5.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-cneuromod.mario_sub-05_ses-012_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license --resource-monitor sourcedata/cneuromod.mario ./ participant",
 "dsid": "c1c43979-a83d-42b7-9508-4fface179af8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.5.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/cneuromod.mario/sub-05/ses-012/fmap/",
  "sourcedata/cneuromod.mario/sub-05/ses-012/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
    @bpinsard
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  10. [DATALAD RUNCMD] fMRIPrep_sub-03/ses-018 

    === Do not change lines below ===
{
 "chain": [],
 "cmd": "containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.5.sing -w ./workdir --participant-label 03 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-cneuromod.mario_sub-03_ses-018_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license --resource-monitor sourcedata/cneuromod.mario ./ participant",
 "dsid": "c1c43979-a83d-42b7-9508-4fface179af8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.5.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/cneuromod.mario/sub-03/ses-018/fmap/",
  "sourcedata/cneuromod.mario/sub-03/ses-018/func/",
  "sourcedata/smriprep/sub-03/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-03/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
    @bpinsard
    bpinsard committed Oct 27, 2022
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  11. [DATALAD RUNCMD] fMRIPrep_sub-05/ses-017 

    === Do not change lines below ===
{
 "chain": [],
 "cmd": "containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.5.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-cneuromod.mario_sub-05_ses-017_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license --resource-monitor sourcedata/cneuromod.mario ./ participant",
 "dsid": "c1c43979-a83d-42b7-9508-4fface179af8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.5.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/cneuromod.mario/sub-05/ses-017/fmap/",
  "sourcedata/cneuromod.mario/sub-05/ses-017/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
    @bpinsard
    bpinsard committed Oct 27, 2022
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  12. [DATALAD RUNCMD] fMRIPrep_sub-05/ses-018 

    === Do not change lines below ===
{
 "chain": [],
 "cmd": "containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.5.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-cneuromod.mario_sub-05_ses-018_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license --resource-monitor sourcedata/cneuromod.mario ./ participant",
 "dsid": "c1c43979-a83d-42b7-9508-4fface179af8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.5.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/cneuromod.mario/sub-05/ses-018/fmap/",
  "sourcedata/cneuromod.mario/sub-05/ses-018/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
    @bpinsard
    bpinsard committed Oct 27, 2022
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  13. append session entity to report to avoid name collision

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  14. append session entity to report to avoid name collision

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  15. append session entity to report to avoid name collision

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  16. append session entity to report to avoid name collision

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  17. append session entity to report to avoid name collision

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  18. append session entity to report to avoid name collision

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  19. append session entity to report to avoid name collision

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  20. append session entity to report to avoid name collision

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  21. append session entity to report to avoid name collision

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  22. append session entity to report to avoid name collision

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  23. append session entity to report to avoid name collision

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  24. append session entity to report to avoid name collision

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  25. Merge branch 'fmriprep_study-cneuromod.mario_sub-02_ses-012.job' into… 

    … dev
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Commits on Oct 28, 2022

  1. Merge branch 'fmriprep_study-cneuromod.mario_sub-03_ses-018.job' into… 

    … dev
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  2. Merge branch 'fmriprep_study-cneuromod.mario_sub-05_ses-010.job' into… 

    … dev
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  3. Merge branch 'fmriprep_study-cneuromod.mario_sub-05_ses-011.job' into… 

    … dev
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  4. Merge branch 'fmriprep_study-cneuromod.mario_sub-05_ses-012.job' into… 

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  5. Merge branch 'fmriprep_study-cneuromod.mario_sub-05_ses-013.job' into… 

    … dev
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  6. Merge branch 'fmriprep_study-cneuromod.mario_sub-05_ses-014.job' into… 

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  7. Merge branch 'fmriprep_study-cneuromod.mario_sub-05_ses-015.job' into… 

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  8. Merge branch 'fmriprep_study-cneuromod.mario_sub-05_ses-016.job' into… 

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  9. Merge branch 'fmriprep_study-cneuromod.mario_sub-05_ses-017.job' into… 

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  10. Merge branch 'fmriprep_study-cneuromod.mario_sub-05_ses-018.job' into… 

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  11. Merge branch 'fmriprep_study-cneuromod.mario_sub-06_ses-011.job' into… 

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Commits on Mar 15, 2023

  1. remove _part-mag from output for BIDS compat.

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    bpinsard committed Mar 15, 2023
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Commits on May 31, 2024

  1. Merge branch 'main' into dev

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  2. add alternate url, probably won't work though

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  3. fix submodules commits

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