Skip to content

Commit

Permalink
Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions README.md
Original file line number Diff line number Diff line change
@@ -114,12 +114,12 @@ Currently the following models are supported in MS2PIP:

Model | Current version | Train-test dataset (unique peptides) | Evaluation dataset (unique peptides) | Median Pearson correlation on evaluation dataset
-|-|-|-|-
HCD | v20190107 | [MassIVE-KB](10.1016/j.cels.2018.08.004) (1 623 712) | [PXD008034](10.1016/j.jprot.2017.12.006) (35 269) | 0.903786
HCD | v20190107 | [MassIVE-KB](https://doi.org/10.1016/j.cels.2018.08.004) (1 623 712) | [PXD008034](https://doi.org/10.1016/j.jprot.2017.12.006) (35 269) | 0.903786
CID | v20190107 | [NIST CID Human](https://chemdata.nist.gov/) (340 356) | [NIST CID Yeast](https://chemdata.nist.gov/) (92 609) | 0.904947
iTRAQ | v20190107 | [NIST iTRAQ](https://chemdata.nist.gov/) (704 041) | [PXD001189](10.1182/blood-2016-05-714048) (41 502) | 0.905870
iTRAQphospho | v20190107 | [NIST iTRAQ phospho](https://chemdata.nist.gov/) (183 383) | [PXD001189](10.1182/blood-2016-05-714048) (9 088) | 0.843898
TMT | v20190107 | [Peng Lab TMT Spectral Library](10.1021/acs.jproteome.8b00594) (1 185 547) | [PXD009495](10.15252/msb.20188242) (36 137) | 0.950460
TTOF5600 | v20190107 | [PXD000954](10.1038/sdata.2014.31) (215 713) | [PXD001587](10.1038/nmeth.3255) (15 111) | 0.746823
iTRAQ | v20190107 | [NIST iTRAQ](https://chemdata.nist.gov/) (704 041) | [PXD001189](https://doi.org/10.1182/blood-2016-05-714048) (41 502) | 0.905870
iTRAQphospho | v20190107 | [NIST iTRAQ phospho](https://chemdata.nist.gov/) (183 383) | [PXD001189](https://doi.org/10.1182/blood-2016-05-714048) (9 088) | 0.843898
TMT | v20190107 | [Peng Lab TMT Spectral Library](https://doi.org/10.1021/acs.jproteome.8b00594) (1 185 547) | [PXD009495](https://doi.org/10.15252/msb.20188242) (36 137) | 0.950460
TTOF5600 | v20190107 | [PXD000954](https://doi.org/10.1038/sdata.2014.31) (215 713) | [PXD001587](https://doi.org/10.1038/nmeth.3255) (15 111) | 0.746823


To train custom MS2PIPc models, please refer to [Training new MS2PIP models](https://github.com/compomics/ms2pip_c/wiki/Training_new_MS2PIP_models) on our Wiki pages.

0 comments on commit fcd8f75

Please sign in to comment.