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@compomics

Computational Omics and Systems Biology Group

The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.

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  1. ThermoRawFileParser ThermoRawFileParser Public

    Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

    C# 208 51

  2. DeepLC DeepLC Public

    DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

    Python 62 21

  3. ms2rescore ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    Python 56 18

  4. compomics-utilities compomics-utilities Public

    Open source Java library for computational proteomics

    Java 32 17

  5. peptide-shaker peptide-shaker Public

    Interpretation of proteomics identification results

    Java 48 18

  6. searchgui searchgui Public

    Highly adaptable common interface for proteomics search and de novo engines

    Java 43 15

Repositories

Showing 10 of 98 repositories
  • ThermoRawFileParser Public

    Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

    compomics/ThermoRawFileParser’s past year of commit activity
    C# 208 Apache-2.0 51 13 1 Updated Apr 9, 2025
  • compomics.github.io Public

    Compomics github website.

    compomics/compomics.github.io’s past year of commit activity
    SCSS 0 MIT 1 0 0 Updated Apr 8, 2025
  • searchgui Public

    Highly adaptable common interface for proteomics search and de novo engines

    compomics/searchgui’s past year of commit activity
    Java 43 15 15 (11 issues need help) 0 Updated Apr 7, 2025
  • peptide-shaker Public

    Interpretation of proteomics identification results

    compomics/peptide-shaker’s past year of commit activity
    Java 48 18 38 (14 issues need help) 0 Updated Apr 7, 2025
  • ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    compomics/ms2rescore’s past year of commit activity
    Python 56 Apache-2.0 18 14 2 Updated Apr 2, 2025
  • Workshop_Grenoble_2025 Public

    Workshop_Grenoble_2025

    compomics/Workshop_Grenoble_2025’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Apr 2, 2025
  • ms2rescore-rs Public

    Rust functionality for the MS²Rescore package

    compomics/ms2rescore-rs’s past year of commit activity
    Rust 2 Apache-2.0 2 0 0 Updated Apr 1, 2025
  • lesSDRF Public
    compomics/lesSDRF’s past year of commit activity
    Jupyter Notebook 6 Apache-2.0 8 5 2 Updated Mar 31, 2025
  • psm_utils Public

    Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

    compomics/psm_utils’s past year of commit activity
    Python 27 Apache-2.0 9 6 (2 issues need help) 2 Updated Mar 28, 2025
  • DeepLC Public

    DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

    compomics/DeepLC’s past year of commit activity
    Python 62 Apache-2.0 21 0 0 Updated Mar 27, 2025
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