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Allow for null for tiltseries quality #217

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Allow for null for tiltseries quality #217

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0a596de
allow null for tiltseries quality
daniel-ji Aug 23, 2024
8a44032
migration fix
daniel-ji Aug 23, 2024
60c0b86
actual fix
daniel-ji Aug 23, 2024
8784b31
fixes
daniel-ji Aug 23, 2024
4b5196e
set gjensen tomogram values to be null
daniel-ji Aug 28, 2024
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1 change: 1 addition & 0 deletions ...rver/migrations/cryoetdataportal/1724357403030_alter_tiltseries_quality_nullable/down.sql
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@@ -0,0 +1 @@
alter table "public"."tiltseries" alter column "tilt_series_quality" set not null;
1 change: 1 addition & 0 deletions ...server/migrations/cryoetdataportal/1724357403030_alter_tiltseries_quality_nullable/up.sql
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alter table "public"."tiltseries" alter column "tilt_series_quality" drop not null;
2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10015.yaml
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Expand Up @@ -109,7 +109,7 @@ tiltseries:
tilt_range:
max: 45.0
min: -45.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 3.0
tilting_scheme: min to max tilt; non-constant tilt steps
total_flux: 45.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10018.yaml
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Expand Up @@ -104,7 +104,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 3.0
tilting_scheme: min to max tilt
total_flux: 50.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10019.yaml
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Expand Up @@ -103,7 +103,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 3.0
tilting_scheme: min to max tilt
total_flux: 50.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10020.yaml
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Expand Up @@ -109,7 +109,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 3.0
tilting_scheme: min to max tilt
total_flux: 50.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10021.yaml
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Expand Up @@ -103,7 +103,7 @@ tiltseries:
tilt_range:
max: 66.0
min: -66.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 3.0
tilting_scheme: min to max tilt
total_flux: 120.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10022.yaml
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Expand Up @@ -101,7 +101,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.0
tilting_scheme: min to max tilt
total_flux: 150.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10024.yaml
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Expand Up @@ -103,7 +103,7 @@ tiltseries:
tilt_range:
max: float {ts-tilt_range-max}
min: float {ts-tilt_range-min}
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: float {ts-tilt_step}
tilting_scheme: min to max tilt
total_flux: float {ts-total_flux}
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10025.yaml
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Expand Up @@ -102,7 +102,7 @@ tiltseries:
tilt_range:
max: 0.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.0
tilting_scheme: min to max tilt
total_flux: 86.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10026.yaml
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Expand Up @@ -104,7 +104,7 @@ tiltseries:
tilt_range:
max: 60.0
min: float {ts-tilt_range-min}
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.0
tilting_scheme: min to max tilt
total_flux: 79.4
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10027.yaml
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Expand Up @@ -101,7 +101,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 2.0
tilting_scheme: min to max tilt
total_flux: 54.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10028.yaml
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Expand Up @@ -102,7 +102,7 @@ tiltseries:
tilt_range:
max: 60.0
min: float {ts-tilt_range-min}
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.0
tilting_scheme: min to max tilt
total_flux: float {ts-total_flux}
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10029.yaml
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Expand Up @@ -104,7 +104,7 @@ tiltseries:
tilt_range:
max: float {ts-tilt_range-max}
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 2.0
tilting_scheme: min to max tilt
total_flux: float {ts-total_flux}
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10030.yaml
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Expand Up @@ -102,7 +102,7 @@ tiltseries:
tilt_range:
max: float {ts-tilt_range-max}
min: float {ts-tilt_range-min}
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 2.0
tilting_scheme: min to max tilt
total_flux: float {ts-total_flux}
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10031.yaml
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Expand Up @@ -100,7 +100,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.0
tilting_scheme: min to max tilt
total_flux: 55.6
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10032.yaml
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Expand Up @@ -101,7 +101,7 @@ tiltseries:
tilt_range:
max: 60.0
min: float {ts-tilt_range-min}
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.5
tilting_scheme: min to max tilt
total_flux: float {ts-total_flux}
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10033.yaml
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Expand Up @@ -102,7 +102,7 @@ tiltseries:
tilt_range:
max: float {ts-tilt_range-max}
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 2.0
tilting_scheme: min to max tilt
total_flux: float {ts-total_flux}
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10034.yaml
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Expand Up @@ -101,7 +101,7 @@ tiltseries:
tilt_range:
max: 50.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.0
tilting_scheme: min to max tilt
total_flux: 151.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10035.yaml
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Expand Up @@ -102,7 +102,7 @@ tiltseries:
tilt_range:
max: float {ts-tilt_range-max}
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 2.0
tilting_scheme: min to max tilt
total_flux: float {ts-total_flux}
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10036.yaml
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Expand Up @@ -104,7 +104,7 @@ tiltseries:
tilt_range:
max: 50.0
min: -50.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.0
tilting_scheme: min to max tilt
total_flux: 179.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10037.yaml
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Expand Up @@ -104,7 +104,7 @@ tiltseries:
tilt_range:
max: 50.0
min: float {ts-tilt_range-min}
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.0
tilting_scheme: min to max tilt
total_flux: float {ts-total_flux}
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10039.yaml
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Expand Up @@ -95,7 +95,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 2.0
tilting_scheme: min to max tilt
total_flux: 110.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10046.yaml
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Expand Up @@ -103,7 +103,7 @@ tiltseries:
tilt_range:
max: 50.0
min: -50.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 2.0
tilting_scheme: min to max tilt
total_flux: 130.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10052.yaml
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Expand Up @@ -104,7 +104,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 3.0
tilting_scheme: min to max tilt
total_flux: 120.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10053.yaml
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Expand Up @@ -102,7 +102,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.5
tilting_scheme: starting tilt to max then min
total_flux: 140.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10054.yaml
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Expand Up @@ -106,7 +106,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: float {ts-tilt_step}
tilting_scheme: starting tilt to max then min
total_flux: 130.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10055.yaml
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Expand Up @@ -106,7 +106,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.5
tilting_scheme: starting tilt to max then min
total_flux: 130.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10057.yaml
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Expand Up @@ -107,7 +107,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 2.0
tilting_scheme: starting tilt to max then min
total_flux: 130.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10058.yaml
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Expand Up @@ -109,7 +109,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 3.0
tilting_scheme: starting tilt to max then min
total_flux: 100.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10059.yaml
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Expand Up @@ -101,7 +101,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 2.0
tilting_scheme: starting tilt to max then min
total_flux: 100.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10060.yaml
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Expand Up @@ -98,7 +98,7 @@ tiltseries:
tilt_range:
max: 51.0
min: -51.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 3.0
tilting_scheme: starting tilt to max then min
total_flux: 100.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10064.yaml
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Expand Up @@ -111,7 +111,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 2.0
tilting_scheme: starting tilt to max then min
total_flux: 100.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10065.yaml
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Expand Up @@ -112,7 +112,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.5
tilting_scheme: starting tilt to max then min
total_flux: 100.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10066.yaml
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Expand Up @@ -112,7 +112,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.5
tilting_scheme: starting tilt to max then min
total_flux: 100.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10067.yaml
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Expand Up @@ -109,7 +109,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.5
tilting_scheme: starting tilt to max then min
total_flux: 100.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10068.yaml
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Expand Up @@ -112,7 +112,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.5
tilting_scheme: starting tilt to max then min
total_flux: 100.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10070.yaml
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Expand Up @@ -112,7 +112,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: float {ts-tilt_step}
tilting_scheme: starting tilt to max then min
total_flux: float {ts-total_flux}
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10071.yaml
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Expand Up @@ -109,7 +109,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.5
tilting_scheme: starting tilt to max then min
total_flux: 100.0
Expand Down
2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10072.yaml
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Expand Up @@ -110,7 +110,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 2.0
tilting_scheme: starting tilt to max then min
total_flux: float {ts-total_flux}
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10073.yaml
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Expand Up @@ -111,7 +111,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -50.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 1.0
tilting_scheme: starting tilt to max then min
total_flux: 90.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10076.yaml
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Expand Up @@ -109,7 +109,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 2.0
tilting_scheme: starting tilt to max then min
total_flux: 100.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10081.yaml
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Expand Up @@ -113,7 +113,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 2.0
tilting_scheme: starting tilt to max then min
total_flux: 100.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10084.yaml
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Expand Up @@ -113,7 +113,7 @@ tiltseries:
tilt_range:
max: 60.0
min: -60.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 2.0
tilting_scheme: starting tilt to max then min
total_flux: 100.0
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10086.yaml
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Expand Up @@ -105,7 +105,7 @@ tiltseries:
tilt_range:
max: float {ts-tilt_range-max}
min: float {ts-tilt_range-min}
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: float {ts-tilt_step}
tilting_scheme: starting tilt to max then min
total_flux: float {ts-total_flux}
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2 changes: 1 addition & 1 deletion ingestion_tools/dataset_configs/gjensen/10087.yaml
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Expand Up @@ -103,7 +103,7 @@ tiltseries:
tilt_range:
max: 51.0
min: -51.0
tilt_series_quality: 4
tilt_series_quality: null
tilt_step: 3.0
tilting_scheme: starting tilt to max then min
total_flux: 100.0
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