Graph Transformer via ResNet SimCLR for Whole Slide Image (WSI) Colon Classification

Implementation from https://www.medrxiv.org/content/10.1101/2021.10.15.21265060v1

1. Training a Patch Feature Extractor

• cd feature_extractor/
• python feature_extract.py (check config.yaml)

2. Build Graph

• python build_graphs.py (check arg parser)

3. Training Graph Transformer

• cd ..
• python main.py (check arg parser at option.py)

4. Visualization (In Progress)