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Graph Transformer via ResNet SimCLR for Whole Slide Image (WSI) Colon Classification

Implementation from https://www.medrxiv.org/content/10.1101/2021.10.15.21265060v1

1. Training a Patch Feature Extractor

  • cd feature_extractor/
  • python feature_extract.py (check config.yaml)

2. Build Graph

  • python build_graphs.py (check arg parser)

3. Training Graph Transformer

  • cd ..
  • python main.py (check arg parser at option.py)

4. Visualization (In Progress)