Dockerfile #14
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| on: | |
| push: | |
| paths: | |
| - common/docker/Dockerfile | |
| workflow_dispatch: | |
| name: Dockerfile | |
| jobs: | |
| sync: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: bioexcel/biobb_workflows | |
| path: ./ | |
| - name: Copy Dockerfile | |
| run: | | |
| cp common/docker/Dockerfile biobb_wf_amber_abc_setup/docker/Dockerfile | |
| sed -i '67a\ cp -r /data/ABCix_config_files /data/wf_notebook/ABCix_config_files; \\' biobb_wf_amber_abc_setup/docker/Dockerfile | |
| cp common/docker/Dockerfile biobb_wf_amber_md_setup/docker/Dockerfile | |
| cp common/docker/Dockerfile biobb_wf_amber_md_setup_lig/docker/Dockerfile | |
| cp common/docker/Dockerfile biobb_wf_cmip/docker/Dockerfile | |
| sed -i '67a\ cp -r /data/Files /data/wf_notebook/Files; \\' biobb_wf_cmip/docker/Dockerfile | |
| cp common/docker/Dockerfile biobb_wf_dna_helparms/docker/Dockerfile | |
| sed -i '38a# Copy the .curvesplus folder into the Docker image' biobb_wf_dna_helparms/docker/Dockerfile | |
| sed -i '39aCOPY .curvesplus /opt/conda/envs/$REPOSITORY' biobb_wf_dna_helparms/docker/Dockerfile | |
| sed -i '40a\\' biobb_wf_dna_helparms/docker/Dockerfile | |
| sed -i '70a\ cp -r /data/TRAJ /data/wf_notebook/TRAJ; \\' biobb_wf_dna_helparms/docker/Dockerfile | |
| cp common/docker/Dockerfile biobb_wf_flexdyn/docker/Dockerfile | |
| cp common/docker/Dockerfile biobb_wf_flexserv/docker/Dockerfile | |
| sed -i '67a\ cp -r /data/Files /data/wf_notebook/Files; \\' biobb_wf_flexserv/docker/Dockerfile | |
| cp common/docker/Dockerfile biobb_wf_godmd/docker/Dockerfile | |
| cp common/docker/Dockerfile biobb_wf_ligand_parameterization/docker/Dockerfile | |
| cp common/docker/Dockerfile biobb_wf_md_setup/docker/Dockerfile | |
| cp common/docker/Dockerfile biobb_wf_pmx_tutorial/docker/Dockerfile | |
| sed -i '67a\ cp -r /data/pmx_tutorial /data/wf_notebook/pmx_tutorial; \\' biobb_wf_pmx_tutorial/docker/Dockerfile | |
| cp common/docker/Dockerfile biobb_wf_protein-complex_md_setup/docker/Dockerfile | |
| cp common/docker/Dockerfile biobb_wf_structure_checking/docker/Dockerfile | |
| cp common/docker/Dockerfile biobb_wf_virtual-screening_fpocket/docker/Dockerfile | |
| - name: Commit and push changes | |
| run: | | |
| git config --global user.name 'github-actions[bot]' | |
| git config --global user.email 'github-actions[bot]@users.noreply.github.com' | |
| git add */docker/Dockerfile && git commit -m "Updated Dockerfile" && git push |