Unifying workflow name

bioexcel · May 31, 2024 · 8e49abb · 8e49abb
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diff --git a/README.md b/README.md
@@ -35,7 +35,7 @@ Two examples are provided:
 git clone https://github.com/bioexcel/biobb_wf_ligand_parameterization.git
 cd biobb_wf_ligand_parameterization
 conda env create -f conda_env/environment.yml
-conda activate biobb_ligand_parameterization_tutorial
+conda activate biobb_wf_ligand_parameterization
 ```
 
 For parametrizing a ligand for use in **GROMACS** launch the following notebook:

diff --git a/binder/environment.yml b/binder/environment.yml
@@ -1,4 +1,4 @@
-name: biobb_ligand_parameterization_tutorial
+name: biobb_wf_ligand_parameterization
 channels:
   - conda-forge
   - bioconda

diff --git a/biobb_wf_ligand_parameterization/docs/source/readme.md b/biobb_wf_ligand_parameterization/docs/source/readme.md
@@ -35,7 +35,7 @@ Two examples are provided:
 git clone https://github.com/bioexcel/biobb_wf_ligand_parameterization.git
 cd biobb_wf_ligand_parameterization
 conda env create -f conda_env/environment.yml
-conda activate biobb_ligand_parameterization_tutorial
+conda activate biobb_wf_ligand_parameterization
 ```
 
 For parametrizing a ligand for use in **GROMACS** launch the following notebook:

diff --git a/biobb_wf_ligand_parameterization/docs/source/tutorial.md b/biobb_wf_ligand_parameterization/docs/source/tutorial.md
@@ -21,7 +21,7 @@ This tutorial aims to illustrate the process of **ligand parameterization** for
 git clone https://github.com/bioexcel/biobb_wf_ligand_parameterization.git
 cd biobb_wf_ligand_parameterization
 conda env create -f conda_env/environment.yml
-conda activate biobb_ligand_parameterization_tutorial
+conda activate biobb_wf_ligand_parameterization
 jupyter-notebook biobb_wf_ligand_parameterization/notebooks/biobb_ligand_parameterization_tutorial.ipynb
 ```
 

diff --git a/biobb_wf_ligand_parameterization/html/biobb_ligand_parameterization_tutorial.web.html b/biobb_wf_ligand_parameterization/html/biobb_ligand_parameterization_tutorial.web.html
@@ -7533,7 +7533,7 @@ <h3 id="Auxiliary-libraries-used">Auxiliary libraries used<a class="anchor-link"
 <h3 id="Conda-Installation-and-Launch">Conda Installation and Launch<a class="anchor-link" href="#Conda-Installation-and-Launch">¶</a></h3><div class="highlight"><pre><span></span><span class="go">git clone https://github.com/bioexcel/biobb_wf_ligand_parameterization.git</span>
 <span class="go">cd biobb_wf_ligand_parameterization</span>
 <span class="go">conda env create -f conda_env/environment.yml</span>
-<span class="go">conda activate biobb_ligand_parameterization_tutorial</span>
+<span class="go">conda activate biobb_wf_ligand_parameterization</span>
 <span class="go">jupyter-notebook biobb_wf_ligand_parameterization/notebooks/biobb_ligand_parameterization_tutorial.ipynb</span>
 </pre></div>
 <hr/>

diff --git a/biobb_wf_ligand_parameterization/notebooks/biobb_ligand_CNS_parameterization_tutorial.ipynb b/biobb_wf_ligand_parameterization/notebooks/biobb_ligand_CNS_parameterization_tutorial.ipynb
@@ -27,7 +27,7 @@
     "git clone https://github.com/bioexcel/biobb_wf_ligand_parameterization.git\n",
     "cd biobb_wf_ligand_parameterization\n",
     "conda env create -f conda_env/environment.yml\n",
-    "conda activate biobb_ligand_parameterization_tutorial\n",
+    "conda activate biobb_wf_ligand_parameterization\n",
     "jupyter-notebook biobb_wf_ligand_parameterization/notebooks/biobb_ligand_parameterization_tutorial.ipynb\n",
     "```\n",
     "\n",

diff --git a/biobb_wf_ligand_parameterization/notebooks/biobb_ligand_parameterization_tutorial.ipynb b/biobb_wf_ligand_parameterization/notebooks/biobb_ligand_parameterization_tutorial.ipynb
@@ -27,7 +27,7 @@
     "git clone https://github.com/bioexcel/biobb_wf_ligand_parameterization.git\n",
     "cd biobb_wf_ligand_parameterization\n",
     "conda env create -f conda_env/environment.yml\n",
-    "conda activate biobb_ligand_parameterization_tutorial\n",
+    "conda activate biobb_wf_ligand_parameterization\n",
     "jupyter-notebook biobb_wf_ligand_parameterization/notebooks/biobb_ligand_parameterization_tutorial.ipynb\n",
     "```\n",
     "\n",
@@ -481,7 +481,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.12.3"
+   "version": "3.8.9"
   },
   "vscode": {
    "interpreter": {

diff --git a/conda_env/environment.yml b/conda_env/environment.yml
@@ -1,4 +1,4 @@
-name: biobb_ligand_parameterization_tutorial
+name: biobb_wf_ligand_parameterization
 channels:
   - conda-forge
   - bioconda