Bug fixes

bioexcel · Feb 28, 2024 · 3b2be5a · 3b2be5a
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diff --git a/.gitignore b/.gitignore
@@ -54,4 +54,9 @@ biobb_wf_amber_md_setup/notebooks/*/*.rst
 !biobb_wf_amber_md_setup/docs/source/_static/abcsetup/sander.md.nc
 !biobb_wf_amber_md_setup/docs/source/_static/abcsetup/structure.ions.parmtop
 !biobb_wf_amber_md_setup/docs/source/_static/abcsetup/structure.leap.4fs.top
-!biobb_wf_amber_md_setup/docs/source/_static/abcsetup/sander.md.ncrst
+!biobb_wf_amber_md_setup/docs/source/_static/abcsetup/sander.md.ncrst
+biobb_wf_amber_md_setup/docs/notebooks/
+biobb_wf_amber_md_setup/html/abcsetup/biobb_amber_ABC_setup.web.ipynb
+biobb_wf_amber_md_setup/html/mdsetup/biobb_amber_setup_notebook.web.ipynb
+biobb_wf_amber_md_setup/html/mdsetup_lig/biobb_amber_complex_setup_notebook.web.ipynb
+biobb_wf_amber_md_setup/html/mdsetup_ph/biobb_amber_CpHMD_notebook.web.ipynb