Improved tmp_files removal and added ipython docstring

bioexcel · Jan 23, 2025 · d4b9b0f · d4b9b0f
1 parent 2237919
commit d4b9b0f
Showing 1 changed file with 7 additions and 2 deletions.
diff --git a/biobb_pmx/pmxbiobb/pmxgentop.py b/biobb_pmx/pmxbiobb/pmxgentop.py
@@ -157,8 +157,9 @@ def launch(self) -> int:
         output_file_name = fu.create_name(
             prefix=self.prefix, step=self.step, name=str(Path(top_file).name)
         )
+        u_dir = fu.create_unique_dir()
         unique_dir_output_file = str(
-            Path(fu.create_unique_dir()).joinpath(output_file_name)
+            Path(u_dir).joinpath(output_file_name)
         )
         fu.log(f"unique_dir_output_file: {unique_dir_output_file}", self.out_log)
 
@@ -242,7 +243,11 @@ def launch(self) -> int:
             out_log=self.out_log,
         )
 
-        self.tmp_files.extend([self.stage_io_dict.get("unique_dir", ""), top_dir, unique_dir_output_file])
+        self.tmp_files.extend([
+            # self.stage_io_dict.get("unique_dir", ""),
+            top_dir,
+            u_dir
+        ])
         self.remove_tmp_files()
 
         self.check_arguments(output_files_created=True, raise_exception=False)