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| @@ -0,0 +1,219 @@ | ||
| { | ||
| "template": "rapid", | ||
| "patientId": "UPLOADPAT01", | ||
| "project": "TEST", | ||
| "kbMatches": [ | ||
| { | ||
| "category": "therapeutic", | ||
| "variantType": "cnv", | ||
| "variant": "TA", | ||
| "iprEvidenceLevel": "IPR-A", | ||
| "kbVariant": "this should be in table 1", | ||
| "matchedCancer": true, | ||
| "evidenceLevel": "table 1" | ||
| }, | ||
| { | ||
| "category": "therapeutic", | ||
| "variantType": "cnv", | ||
| "variant": "TA", | ||
| "iprEvidenceLevel": "IPR-B", | ||
| "kbVariant": "thisshouldbeintable1", | ||
| "matchedCancer": true, | ||
| "evidenceLevel": "table 1" | ||
| }, | ||
| { | ||
| "category": "unknown", | ||
| "variantType": "cnv", | ||
| "variant": "TA", | ||
| "iprEvidenceLevel": "IPR-A", | ||
| "kbVariant": "geneX specific mutation 1", | ||
| "evidenceLevel": "table null" | ||
| }, | ||
| { | ||
| "category": "unknown", | ||
| "variantType": "cnv", | ||
| "variant": "CR", | ||
| "iprEvidenceLevel": "IPR-A", | ||
| "kbVariant": "this.should.be:table2", | ||
| "evidenceLevel": "table 2" | ||
| }, | ||
| { | ||
| "category": "unknown", | ||
| "variantType": "msi", | ||
| "variant": "msi", | ||
| "iprEvidenceLevel": "IPR-A", | ||
| "kbVariant": "also should be table 2", | ||
| "evidenceLevel": "table 2" | ||
| }, | ||
| { | ||
| "category": "unknown", | ||
| "variantType": "tmb", | ||
| "variant": "tmb", | ||
| "iprEvidenceLevel": "IPR-A", | ||
| "kbVariant": "geneX specific mutation 2", | ||
| "evidenceLevel": "table 2" | ||
| }, | ||
| { | ||
| "category": "therapeutic", | ||
| "variantType": "cnv", | ||
| "variant": "CR", | ||
| "iprEvidenceLevel": "IPR-C", | ||
| "kbVariant": "table2 specific mutation", | ||
| "evidenceLevel": "table 2" | ||
| }, | ||
| { | ||
| "category": "unknown", | ||
| "variantType": "cnv", | ||
| "variant": "CR", | ||
| "iprEvidenceLevel": "IPR-C", | ||
| "kbVariant": "geneX specific mutation 3", | ||
| "evidenceLevel": "table 2" | ||
| }, | ||
| { | ||
| "category": "unknown", | ||
| "variantType": "cnv", | ||
| "variant": "CR", | ||
| "iprEvidenceLevel": null, | ||
| "kbVariant": "geneX specific mutation 4", | ||
| "evidenceLevel": "table 2" | ||
| }, | ||
| { | ||
| "category": "therapeutic", | ||
| "variantType": "cnv", | ||
| "variant": "CR", | ||
| "iprEvidenceLevel": null, | ||
| "kbVariant": "geneX specific mutation 5", | ||
| "evidenceLevel": "table 2" | ||
| }, | ||
| { | ||
| "category": "therapeutic", | ||
| "variantType": "cnv", | ||
| "variant": "CR", | ||
| "iprEvidenceLevel": "IPR-A", | ||
| "kbVariant": "geneX specific mutation 6", | ||
| "matchedCancer": false, | ||
| "evidenceLevel": "table 2" | ||
| }, | ||
| { | ||
| "category": "therapeutic", | ||
| "variantType": "exp", | ||
| "variant": "alltrueexp", | ||
| "iprEvidenceLevel": "IPR-A", | ||
| "kbVariant": "geneX specific mutation 7", | ||
| "matchedCancer": true, | ||
| "evidenceLevel": "table null" | ||
| }, | ||
| { | ||
| "category": "therapeutic", | ||
| "variantType": "mut", | ||
| "variant": "tageneric", | ||
| "iprEvidenceLevel": "IPR-A", | ||
| "kbVariant": "geneX missense", | ||
| "matchedCancer": true, | ||
| "evidenceLevel": "table 3" | ||
| }, | ||
| { | ||
| "category": "therapeutic", | ||
| "variantType": "mut", | ||
| "variant": "crgeneric", | ||
| "iprEvidenceLevel": "IPR-C", | ||
| "kbVariant": "geneX mutation", | ||
| "evidenceLevel": "table 3" | ||
| } | ||
| ], | ||
| "genes": [ | ||
| { | ||
| "name": "oncogene", | ||
| "oncogene": true, | ||
| "tumourSuppressor": false | ||
| }, | ||
| { | ||
| "name": "tumoursupressor", | ||
| "oncogene": false, | ||
| "tumourSuppressor": true | ||
| }, | ||
| { | ||
| "name": "alltrue", | ||
| "oncogene": true, | ||
| "tumourSuppressor": true | ||
| }, | ||
| { | ||
| "name": "allfalse", | ||
| "oncogene": false, | ||
| "tumourSuppressor": false | ||
| }, | ||
| { | ||
| "name": "table1CV" | ||
| }, | ||
| { | ||
| "name": "table2CV" | ||
| } | ||
| ], | ||
| "smallMutations": [ | ||
| { | ||
| "gene": "alltrue", | ||
| "key": "tageneric", | ||
| "displayName": "table 3" | ||
| }, | ||
| { | ||
| "gene": "alltrue", | ||
| "key": "crgeneric", | ||
| "displayName": "table 3" | ||
| }, | ||
| { | ||
| "gene": "oncogene", | ||
| "key": "usoncogene", | ||
| "displayName": "table 3" | ||
| }, | ||
| { | ||
| "gene": "tumoursupressor", | ||
| "key": "ustumoursupressor", | ||
| "displayName": "table 3" | ||
| }, | ||
| { | ||
| "gene": "alltrue", | ||
| "key": "usalltrue", | ||
| "displayName": "table 3" | ||
| }, | ||
| { | ||
| "gene": "allfalse", | ||
| "key": "usallfalse", | ||
| "displayName": "table null" | ||
| } | ||
| ], | ||
| "copyVariants": [ | ||
| { | ||
| "gene": "table1CV", | ||
| "key": "TA", | ||
| "displayName": "table 1" | ||
| }, | ||
| { | ||
| "gene": "table2CV", | ||
| "key": "CR", | ||
| "displayName": "table 2" | ||
| } | ||
| ], | ||
| "expressionVariants": [ | ||
| { | ||
| "gene": "allfalse", | ||
| "key": "alltrueexp", | ||
| "displayName": "table null" | ||
| } | ||
| ], | ||
| "tmburMutationBurden": { | ||
| "key": "tmb", | ||
| "displayName": "table 2" | ||
| }, | ||
| "msi": [ | ||
| { | ||
| "score": 100, | ||
| "key": "msi", | ||
| "displayName": "table 2" | ||
| }, | ||
| { | ||
| "score": 15, | ||
| "key": "mss", | ||
| "displayName": "table null" | ||
| } | ||
| ] | ||
| } |