-
Notifications
You must be signed in to change notification settings - Fork 4
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Bugfix/KBDEV 1135 update NCIt loader with newer file formatting #131
Merged
sshugsc
merged 2 commits into
develop
from
bugfix/KBDEV-1135-update-NCIt-loader-with-newer-file-formatting
Nov 27, 2023
Merged
Changes from 1 commit
Commits
Show all changes
2 commits
Select commit
Hold shift + click to select a range
File filter
Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
|
@@ -3,8 +3,9 @@ | |
First download the latest version of the plain text tab delimited files. This should include both | ||
the main thesaurus file and the cross mapping file | ||
|
||
- [Load the Main Flat File](#load-the-main-flat-file) | ||
- [FDA Cross Mapping File](#fda-cross-mapping-file) | ||
- [NCI Thesaurus](#nci-thesaurus) | ||
- [Load the Main Flat File](#load-the-main-flat-file) | ||
- [FDA Cross Mapping File](#fda-cross-mapping-file) | ||
|
||
## Load the Main Flat File | ||
|
||
|
@@ -27,11 +28,12 @@ This is a headerless tab delimited file with the following | |
- display name | ||
- concept status | ||
- semantic type | ||
- concept in subset | ||
|
||
Next use the general file loader to load the NCIt terms | ||
|
||
```bash | ||
node bin/loadFile ncit Thesaurus.txt | ||
node bin/load.js file ncit Thesaurus.txt | ||
``` | ||
|
||
## FDA Cross Mapping File | ||
|
@@ -46,5 +48,5 @@ Then, after you have loaded the [FDA-SRS](../fdaSrs) data (if you are planning t | |
load the cross-reference mapping data | ||
|
||
```bash | ||
node bin/loadFile ncitFdaXref FDA-UNII_NCIt_Subsets.txt | ||
node bin/load.js file ncitFdaXref FDA-UNII_NCIt_Subsets.txt | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. wow, that shows how old that loader is, lol! |
||
``` |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
concept name also changed to concept IRI.