made abstract PottsCellFlyStem class with subclasses for each cell ty… #167
reviewdog [checkstyle] report
reported by reviewdog 🐶
Findings (271)
setup/setupInvertTwoStemDaughtersStemDaughterBasalOrBoth.xml|1| File does not end with a newline.
setup/setupMUDmutOneStemDaughterStemDaughterLeft.xml|1| File does not end with a newline.
setup/setupMUDmutOneStemDaughterStemDaughterRandom.xml|1| File does not end with a newline.
setup/setupInvertOneStemDaughterStemDaughterBasal.xml|1| File does not end with a newline.
setup/setupMudmutTwoStemDaughtersStemDaughterRandom.xml|1| File does not end with a newline.
setup/setupWT.xml|1| File does not end with a newline.
setup/setupSymmetricTwoStemDaughtersStemDaughterApicalOrBoth.xml|1| File does not end with a newline.
setup/setupSymmetricOneStemDaughterStemDaughterApical.xml|1| File does not end with a newline.
src/arcade/patch/agent/cell/PatchCell.java|181 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/cell/PatchCell.java|319 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/cell/PatchCell.java|433 col 19| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/cell/PatchCell.java|440 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/cell/PatchCellCancerStem.java|56 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/module/PatchModuleMigration.java|60 col 23| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/module/PatchModuleProliferation.java|80 col 23| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/module/PatchModuleProliferation.java|107 col 23| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/process/PatchProcessSignalingComplex.java|225 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/process/PatchProcessSignalingRandom.java|37 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/process/PatchProcessSignalingSimple.java|116 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/process/PatchProcessMetabolismComplex.java|100 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/process/PatchProcessSignalingMedium.java|154 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/process/PatchProcessMetabolismMedium.java|83 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/process/PatchProcessMetabolismSimple.java|73 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/sim/output/PatchOutputSerializer.java|155 col 15| Comment matches to-do format 'TODO:'.
src/arcade/core/gui/GUI.java|364 col 5| Class XMLFileFilter should be declared as final.
src/arcade/potts/agent/cell/PottsCellFlyNeuronWT.java|14 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyNeuronWT.java|16 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyNeuronWT.java|17| Line is longer than 100 characters (found 101).
src/arcade/potts/agent/cell/PottsCellFlyNeuronWT.java|17 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyNeuronWT.java|26| Line is longer than 100 characters (found 107).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|14 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|16 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|16 col 71| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|18 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|19 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|19 col 5| 'VARIABLE_DEF' should be separated from previous line.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|19 col 50| ';' should be separated from previous line.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|21| Line is longer than 100 characters (found 114).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|21 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|28| Line is longer than 100 characters (found 155).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|28| Line is longer than 120 characters (found 155).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|35| Line is longer than 100 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|35| Line is longer than 120 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|38| Line is longer than 100 characters (found 131).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|38| Line is longer than 120 characters (found 131).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|39| Line is longer than 100 characters (found 111).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|44| Line is longer than 100 characters (found 131).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|44| Line is longer than 120 characters (found 131).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|45| Line is longer than 100 characters (found 124).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|45| Line is longer than 120 characters (found 124).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|55| Line is longer than 100 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|55| Line is longer than 120 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert1StemBasal.java|14 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert1StemBasal.java|16 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert1StemBasal.java|16 col 70| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert1StemBasal.java|18 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert1StemBasal.java|20| Line is longer than 100 characters (found 113).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert1StemBasal.java|20 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert1StemBasal.java|38| Line is longer than 100 characters (found 119).
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric1StemApical.java|11 col 8| Unused import - arcade.potts.agent.module.PottsModuleProliferationFlyStemTwoThirdsSplitApicalReturn.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric1StemApical.java|15 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric1StemApical.java|17 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric1StemApical.java|17 col 74| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric1StemApical.java|19 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric1StemApical.java|21| Line is longer than 100 characters (found 117).
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric1StemApical.java|21 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric1StemApical.java|39| Line is longer than 100 characters (found 119).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|14 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|16 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|16 col 76| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|18 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|19 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|19 col 5| 'VARIABLE_DEF' should be separated from previous line.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|20 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|20 col 5| 'VARIABLE_DEF' should be separated from previous line.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|22| Line is longer than 100 characters (found 119).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|22 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|35| Line is longer than 100 characters (found 139).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|35| Line is longer than 120 characters (found 139).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|38| Line is longer than 100 characters (found 131).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|38| Line is longer than 120 characters (found 131).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|39| Line is longer than 100 characters (found 110).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|44| Line is longer than 100 characters (found 131).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|44| Line is longer than 120 characters (found 131).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|45| Line is longer than 100 characters (found 136).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|45| Line is longer than 120 characters (found 136).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|55| Line is longer than 100 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|55| Line is longer than 120 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|1| File does not end with a newline.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|7 col 33| Using the '.' form of import should be avoided - arcade.potts.agent.module..
src/arcade/potts/agent/cell/PottsCellFlyStem.java|11 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|14 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|15| First sentence should end with a period.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|18| First sentence should end with a period.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|21 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|33 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|38 col 63| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|66 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|68 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|69 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|71| Line is longer than 100 characters (found 103).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|71 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|96| Line is longer than 100 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|96| Line is longer than 120 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|102 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|103 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|105| Line is longer than 100 characters (found 118).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|105 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|130| Line is longer than 100 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|130| Line is longer than 120 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|136 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|137 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|139| Line is longer than 100 characters (found 116).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|139 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|164| Line is longer than 100 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|164| Line is longer than 120 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|170 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|171 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|172 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|172 col 9| 'VARIABLE_DEF' should be separated from previous line.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|174| Line is longer than 100 characters (found 118).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|174 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|194| Line is longer than 100 characters (found 127).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|194| Line is longer than 120 characters (found 127).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|197| Line is longer than 100 characters (found 135).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|197| Line is longer than 120 characters (found 135).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|198| Line is longer than 100 characters (found 115).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|200| Line is longer than 100 characters (found 106).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|203| Line is longer than 100 characters (found 135).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|203| Line is longer than 120 characters (found 135).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|204| Line is longer than 100 characters (found 128).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|204| Line is longer than 120 characters (found 128).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|206| Line is longer than 100 characters (found 106).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|214| Line is longer than 100 characters (found 127).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|214| Line is longer than 120 characters (found 127).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|221 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|222 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|224| Line is longer than 100 characters (found 117).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|224 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|249| Line is longer than 100 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|249| Line is longer than 120 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|255 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|256 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|257 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|257 col 9| 'VARIABLE_DEF' should be separated from previous line.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|259| Line is longer than 100 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|259| Line is longer than 120 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|259 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|279| Line is longer than 100 characters (found 143).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|279| Line is longer than 120 characters (found 143).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|282| Line is longer than 100 characters (found 135).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|282| Line is longer than 120 characters (found 135).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|285| Line is longer than 100 characters (found 106).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|288| Line is longer than 100 characters (found 135).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|288| Line is longer than 120 characters (found 135).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|289| Line is longer than 100 characters (found 133).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|289| Line is longer than 120 characters (found 133).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|291| Line is longer than 100 characters (found 106).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|299| Line is longer than 100 characters (found 127).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|299| Line is longer than 120 characters (found 127).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|306 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|307 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|309| Line is longer than 100 characters (found 118).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|309 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|334| Line is longer than 100 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|334| Line is longer than 120 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|340 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|341 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|343| Line is longer than 100 characters (found 127).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|343| Line is longer than 120 characters (found 127).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|343 col 9| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStem.java|365| Line is longer than 100 characters (found 124).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|365| Line is longer than 120 characters (found 124).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|367| Line is longer than 100 characters (found 106).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|374| Line is longer than 100 characters (found 127).
src/arcade/potts/agent/cell/PottsCellFlyStem.java|374| Line is longer than 120 characters (found 127).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemLeft.java|14 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemLeft.java|16 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemLeft.java|16 col 69| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemLeft.java|18 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemLeft.java|20| Line is longer than 100 characters (found 112).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemLeft.java|20 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemLeft.java|38| Line is longer than 100 characters (found 119).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemRandom.java|14 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemRandom.java|16 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemRandom.java|16 col 71| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemRandom.java|18 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemRandom.java|20| Line is longer than 100 characters (found 114).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemRandom.java|20 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemRandom.java|38| Line is longer than 100 characters (found 119).
src/arcade/potts/agent/cell/PottsCellContainer.java|159| Line is longer than 100 characters (found 104).
src/arcade/potts/agent/cell/PottsCellContainer.java|163| Line is longer than 100 characters (found 104).
src/arcade/potts/agent/cell/PottsCellContainer.java|170| Line is longer than 100 characters (found 102).
src/arcade/potts/agent/cell/PottsCellContainer.java|174| Line is longer than 100 characters (found 102).
src/arcade/potts/agent/cell/PottsCellContainer.java|183| Line is longer than 100 characters (found 104).
src/arcade/potts/agent/cell/PottsCellContainer.java|187| Line is longer than 100 characters (found 104).
src/arcade/potts/agent/cell/PottsCellContainer.java|194| Line is longer than 100 characters (found 103).
src/arcade/potts/agent/cell/PottsCellContainer.java|198| Line is longer than 100 characters (found 103).
src/arcade/potts/agent/cell/PottsCellContainer.java|205| Line is longer than 100 characters (found 109).
src/arcade/potts/agent/cell/PottsCellContainer.java|209| Line is longer than 100 characters (found 109).
src/arcade/potts/agent/cell/PottsCellContainer.java|216| Line is longer than 100 characters (found 107).
src/arcade/potts/agent/cell/PottsCellContainer.java|220| Line is longer than 100 characters (found 107).
src/arcade/potts/agent/cell/PottsCellContainer.java|227| Line is longer than 100 characters (found 113).
src/arcade/potts/agent/cell/PottsCellContainer.java|231| Line is longer than 100 characters (found 113).
src/arcade/potts/agent/cell/PottsCellFlyStemWT.java|14 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStemWT.java|16 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemWT.java|16 col 56| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStemWT.java|18 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemWT.java|20 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemWT.java|38| Line is longer than 100 characters (found 119).
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|11 col 8| Unused import - arcade.potts.agent.module.PottsModuleProliferationFlyStemTwoThirdsSplitApicalReturn.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|15 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|17 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|17 col 80| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|19 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|21| Line is longer than 100 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|21| Line is longer than 120 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|21 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|36| Line is longer than 100 characters (found 120).
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|45| Line is longer than 100 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|45| Line is longer than 120 characters (found 123).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemVerticalSplitLeftReturn.java|21| Line is longer than 100 characters (found 102).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemVerticalSplitLeftReturn.java|233| Line is longer than 100 characters (found 112).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemVerticalSplitRandomReturn.java|21| Line is longer than 100 characters (found 104).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemVerticalSplitRandomReturn.java|232| Line is longer than 100 characters (found 141).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemVerticalSplitRandomReturn.java|232| Line is longer than 120 characters (found 141).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemVerticalSplitRandomReturn.java|232 col 118| Comment matches to-do format 'TODO:'.
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemHorizontalSplitBasalReturn.java|24| Line is longer than 100 characters (found 105).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemHorizontalSplitBasalReturn.java|236| Line is longer than 100 characters (found 142).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemHorizontalSplitBasalReturn.java|236| Line is longer than 120 characters (found 142).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemHorizontalSplitBasalReturn.java|236 col 119| Comment matches to-do format 'TODO:'.
src/arcade/potts/agent/module/PottsModuleProliferation.java|99| Line is longer than 100 characters (found 109).
src/arcade/potts/agent/module/PottsModuleProliferation.java|99 col 86| Comment matches to-do format 'TODO:'.
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemOneThirdSplitBasalReturn.java|21| Line is longer than 100 characters (found 103).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemOneThirdSplitBasalReturn.java|233| Line is longer than 100 characters (found 145).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemOneThirdSplitBasalReturn.java|233| Line is longer than 120 characters (found 145).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemOneThirdSplitBasalReturn.java|233 col 122| Comment matches to-do format 'TODO:'.
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemTwoThirdsSplitApicalReturn.java|21| Line is longer than 100 characters (found 105).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemTwoThirdsSplitApicalReturn.java|233| Line is longer than 100 characters (found 142).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemTwoThirdsSplitApicalReturn.java|233| Line is longer than 120 characters (found 142).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemTwoThirdsSplitApicalReturn.java|233 col 119| Comment matches to-do format 'TODO:'.
src/arcade/potts/sim/PottsSeries.java|194 col 15| Comment matches to-do format 'TODO:'.
src/arcade/potts/env/location/PottsLocation.java|296 col 5| Class 'PottsLocation' looks like designed for extension (can be subclassed), but the method 'splitHalvesHorizontallyReturnBasalHalf' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PottsLocation' final or making the method 'splitHalvesHorizontallyReturnBasalHalf' static/final/abstract/empty, or adding allowed annotation for the method.
src/arcade/potts/env/location/PottsLocation.java|296 col 5| Missing a Javadoc comment.
src/arcade/potts/env/location/PottsLocation.java|316| Line is longer than 100 characters (found 133).
src/arcade/potts/env/location/PottsLocation.java|316| Line is longer than 120 characters (found 133).
src/arcade/potts/env/location/PottsLocation.java|316 col 5| Class 'PottsLocation' looks like designed for extension (can be subclassed), but the method 'splitHalvesVerticallyReturnRandomHalf' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PottsLocation' final or making the method 'splitHalvesVerticallyReturnRandomHalf' static/final/abstract/empty, or adding allowed annotation for the method.
src/arcade/potts/env/location/PottsLocation.java|316 col 5| Missing a Javadoc comment.
... (Too many findings. Dropped some findings)
Filtered Findings (0)
Annotations
Check failure on line 1 in setup/setupInvertTwoStemDaughtersStemDaughterBasalOrBoth.xml
github-actions / checkstyle
[checkstyle] setup/setupInvertTwoStemDaughtersStemDaughterBasalOrBoth.xml#L1 <com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck>
File does not end with a newline.
Raw output
/github/workspace/./setup/setupInvertTwoStemDaughtersStemDaughterBasalOrBoth.xml:1:0: error: File does not end with a newline. (com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck)
Check failure on line 1 in setup/setupMUDmutOneStemDaughterStemDaughterLeft.xml
github-actions / checkstyle
[checkstyle] setup/setupMUDmutOneStemDaughterStemDaughterLeft.xml#L1 <com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck>
File does not end with a newline.
Raw output
/github/workspace/./setup/setupMUDmutOneStemDaughterStemDaughterLeft.xml:1:0: error: File does not end with a newline. (com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck)
Check failure on line 1 in setup/setupMUDmutOneStemDaughterStemDaughterRandom.xml
github-actions / checkstyle
[checkstyle] setup/setupMUDmutOneStemDaughterStemDaughterRandom.xml#L1 <com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck>
File does not end with a newline.
Raw output
/github/workspace/./setup/setupMUDmutOneStemDaughterStemDaughterRandom.xml:1:0: error: File does not end with a newline. (com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck)
Check failure on line 1 in setup/setupInvertOneStemDaughterStemDaughterBasal.xml
github-actions / checkstyle
[checkstyle] setup/setupInvertOneStemDaughterStemDaughterBasal.xml#L1 <com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck>
File does not end with a newline.
Raw output
/github/workspace/./setup/setupInvertOneStemDaughterStemDaughterBasal.xml:1:0: error: File does not end with a newline. (com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck)
Check failure on line 1 in setup/setupMudmutTwoStemDaughtersStemDaughterRandom.xml
github-actions / checkstyle
[checkstyle] setup/setupMudmutTwoStemDaughtersStemDaughterRandom.xml#L1 <com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck>
File does not end with a newline.
Raw output
/github/workspace/./setup/setupMudmutTwoStemDaughtersStemDaughterRandom.xml:1:0: error: File does not end with a newline. (com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck)
Check failure on line 1 in setup/setupWT.xml
github-actions / checkstyle
[checkstyle] setup/setupWT.xml#L1 <com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck>
File does not end with a newline.
Raw output
/github/workspace/./setup/setupWT.xml:1:0: error: File does not end with a newline. (com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck)
Check failure on line 1 in setup/setupSymmetricTwoStemDaughtersStemDaughterApicalOrBoth.xml
github-actions / checkstyle
[checkstyle] setup/setupSymmetricTwoStemDaughtersStemDaughterApicalOrBoth.xml#L1 <com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck>
File does not end with a newline.
Raw output
/github/workspace/./setup/setupSymmetricTwoStemDaughtersStemDaughterApicalOrBoth.xml:1:0: error: File does not end with a newline. (com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck)
Check failure on line 1 in setup/setupSymmetricOneStemDaughterStemDaughterApical.xml
github-actions / checkstyle
[checkstyle] setup/setupSymmetricOneStemDaughterStemDaughterApical.xml#L1 <com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck>
File does not end with a newline.
Raw output
/github/workspace/./setup/setupSymmetricOneStemDaughterStemDaughterApical.xml:1:0: error: File does not end with a newline. (com.puppycrawl.tools.checkstyle.checks.NewlineAtEndOfFileCheck)
Check failure on line 181 in src/arcade/patch/agent/cell/PatchCell.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/cell/PatchCell.java#L181 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/cell/PatchCell.java:181:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 319 in src/arcade/patch/agent/cell/PatchCell.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/cell/PatchCell.java#L319 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/cell/PatchCell.java:319:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 433 in src/arcade/patch/agent/cell/PatchCell.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/cell/PatchCell.java#L433 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/cell/PatchCell.java:433:19: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 440 in src/arcade/patch/agent/cell/PatchCell.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/cell/PatchCell.java#L440 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/cell/PatchCell.java:440:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 56 in src/arcade/patch/agent/cell/PatchCellCancerStem.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/cell/PatchCellCancerStem.java#L56 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/cell/PatchCellCancerStem.java:56:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 60 in src/arcade/patch/agent/module/PatchModuleMigration.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/module/PatchModuleMigration.java#L60 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/module/PatchModuleMigration.java:60:23: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 80 in src/arcade/patch/agent/module/PatchModuleProliferation.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/module/PatchModuleProliferation.java#L80 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/module/PatchModuleProliferation.java:80:23: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 107 in src/arcade/patch/agent/module/PatchModuleProliferation.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/module/PatchModuleProliferation.java#L107 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/module/PatchModuleProliferation.java:107:23: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 225 in src/arcade/patch/agent/process/PatchProcessSignalingComplex.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/process/PatchProcessSignalingComplex.java#L225 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/process/PatchProcessSignalingComplex.java:225:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 37 in src/arcade/patch/agent/process/PatchProcessSignalingRandom.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/process/PatchProcessSignalingRandom.java#L37 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/process/PatchProcessSignalingRandom.java:37:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 116 in src/arcade/patch/agent/process/PatchProcessSignalingSimple.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/process/PatchProcessSignalingSimple.java#L116 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/process/PatchProcessSignalingSimple.java:116:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 100 in src/arcade/patch/agent/process/PatchProcessMetabolismComplex.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/process/PatchProcessMetabolismComplex.java#L100 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/process/PatchProcessMetabolismComplex.java:100:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 154 in src/arcade/patch/agent/process/PatchProcessSignalingMedium.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/process/PatchProcessSignalingMedium.java#L154 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/process/PatchProcessSignalingMedium.java:154:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 83 in src/arcade/patch/agent/process/PatchProcessMetabolismMedium.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/process/PatchProcessMetabolismMedium.java#L83 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/process/PatchProcessMetabolismMedium.java:83:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 73 in src/arcade/patch/agent/process/PatchProcessMetabolismSimple.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/process/PatchProcessMetabolismSimple.java#L73 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/process/PatchProcessMetabolismSimple.java:73:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 155 in src/arcade/patch/sim/output/PatchOutputSerializer.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/sim/output/PatchOutputSerializer.java#L155 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/sim/output/PatchOutputSerializer.java:155:15: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 364 in src/arcade/core/gui/GUI.java
github-actions / checkstyle
[checkstyle] src/arcade/core/gui/GUI.java#L364 <com.puppycrawl.tools.checkstyle.checks.design.FinalClassCheck>
Class XMLFileFilter should be declared as final.
Raw output
/github/workspace/./src/arcade/core/gui/GUI.java:364:5: error: Class XMLFileFilter should be declared as final. (com.puppycrawl.tools.checkstyle.checks.design.FinalClassCheck)