fixed bug in wt behavior
reviewdog [checkstyle] report
reported by reviewdog 🐶
Findings (181)
src/arcade/patch/agent/process/PatchProcessSignalingMedium.java|154 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/process/PatchProcessMetabolismSimple.java|73 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/process/PatchProcessSignalingRandom.java|37 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/process/PatchProcessSignalingComplex.java|225 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/process/PatchProcessSignalingSimple.java|116 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/process/PatchProcessMetabolismMedium.java|83 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/process/PatchProcessMetabolismComplex.java|100 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/cell/PatchCellCancerStem.java|56 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/cell/PatchCell.java|181 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/cell/PatchCell.java|319 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/cell/PatchCell.java|433 col 19| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/cell/PatchCell.java|440 col 11| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/module/PatchModuleProliferation.java|80 col 23| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/module/PatchModuleProliferation.java|107 col 23| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/module/PatchModuleMigration.java|60 col 23| Comment matches to-do format 'TODO:'.
src/arcade/patch/sim/output/PatchOutputSerializer.java|155 col 15| Comment matches to-do format 'TODO:'.
src/arcade/core/gui/GUI.java|364 col 5| Class XMLFileFilter should be declared as final.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|14 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|16 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|16 col 71| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|18 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|19 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|19 col 5| 'VARIABLE_DEF' should be separated from previous line.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|19 col 50| ';' should be separated from previous line.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|21| Line is longer than 100 characters (found 114).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|21 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|28| Line is longer than 100 characters (found 155).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|28| Line is longer than 120 characters (found 155).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|35| Line is longer than 100 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|35| Line is longer than 120 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|38| Line is longer than 100 characters (found 131).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|38| Line is longer than 120 characters (found 131).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|39| Line is longer than 100 characters (found 111).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|44| Line is longer than 100 characters (found 131).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|44| Line is longer than 120 characters (found 131).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|45| Line is longer than 100 characters (found 124).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|45| Line is longer than 120 characters (found 124).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|55| Line is longer than 100 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java|55| Line is longer than 120 characters (found 123).
src/arcade/potts/agent/cell/PottsCellContainer.java|159| Line is longer than 100 characters (found 104).
src/arcade/potts/agent/cell/PottsCellContainer.java|163| Line is longer than 100 characters (found 104).
src/arcade/potts/agent/cell/PottsCellContainer.java|170| Line is longer than 100 characters (found 102).
src/arcade/potts/agent/cell/PottsCellContainer.java|174| Line is longer than 100 characters (found 102).
src/arcade/potts/agent/cell/PottsCellContainer.java|183| Line is longer than 100 characters (found 104).
src/arcade/potts/agent/cell/PottsCellContainer.java|187| Line is longer than 100 characters (found 104).
src/arcade/potts/agent/cell/PottsCellContainer.java|194| Line is longer than 100 characters (found 103).
src/arcade/potts/agent/cell/PottsCellContainer.java|198| Line is longer than 100 characters (found 103).
src/arcade/potts/agent/cell/PottsCellContainer.java|205| Line is longer than 100 characters (found 109).
src/arcade/potts/agent/cell/PottsCellContainer.java|209| Line is longer than 100 characters (found 109).
src/arcade/potts/agent/cell/PottsCellContainer.java|216| Line is longer than 100 characters (found 107).
src/arcade/potts/agent/cell/PottsCellContainer.java|220| Line is longer than 100 characters (found 107).
src/arcade/potts/agent/cell/PottsCellContainer.java|227| Line is longer than 100 characters (found 113).
src/arcade/potts/agent/cell/PottsCellContainer.java|231| Line is longer than 100 characters (found 113).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert1StemBasal.java|14 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert1StemBasal.java|16 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert1StemBasal.java|16 col 70| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert1StemBasal.java|18 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert1StemBasal.java|20| Line is longer than 100 characters (found 113).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert1StemBasal.java|20 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert1StemBasal.java|38| Line is longer than 100 characters (found 119).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemRandom.java|14 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemRandom.java|16 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemRandom.java|16 col 71| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemRandom.java|18 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemRandom.java|20| Line is longer than 100 characters (found 114).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemRandom.java|20 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemRandom.java|38| Line is longer than 100 characters (found 119).
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|14 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|16 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|16 col 80| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|18 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|20| Line is longer than 100 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|20| Line is longer than 120 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|20 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|35| Line is longer than 100 characters (found 120).
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|44| Line is longer than 100 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java|44| Line is longer than 120 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyNeuronWT.java|14 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyNeuronWT.java|16 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyNeuronWT.java|17| Line is longer than 100 characters (found 101).
src/arcade/potts/agent/cell/PottsCellFlyNeuronWT.java|17 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyNeuronWT.java|26| Line is longer than 100 characters (found 107).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|14 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|16 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|16 col 76| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|18 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|19 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|19 col 5| 'VARIABLE_DEF' should be separated from previous line.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|20 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|20 col 5| 'VARIABLE_DEF' should be separated from previous line.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|22| Line is longer than 100 characters (found 119).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|22 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|35| Line is longer than 100 characters (found 139).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|35| Line is longer than 120 characters (found 139).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|38| Line is longer than 100 characters (found 131).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|38| Line is longer than 120 characters (found 131).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|39| Line is longer than 100 characters (found 110).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|44| Line is longer than 100 characters (found 131).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|44| Line is longer than 120 characters (found 131).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|45| Line is longer than 100 characters (found 136).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|45| Line is longer than 120 characters (found 136).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|55| Line is longer than 100 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStemInvert2StemBasalOrBoth.java|55| Line is longer than 120 characters (found 123).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemLeft.java|14 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemLeft.java|16 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemLeft.java|16 col 69| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemLeft.java|18 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemLeft.java|20| Line is longer than 100 characters (found 112).
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemLeft.java|20 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut1StemLeft.java|38| Line is longer than 100 characters (found 119).
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric1StemApical.java|14 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric1StemApical.java|16 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric1StemApical.java|16 col 74| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric1StemApical.java|18 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric1StemApical.java|20| Line is longer than 100 characters (found 117).
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric1StemApical.java|20 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric1StemApical.java|38| Line is longer than 100 characters (found 119).
src/arcade/potts/agent/cell/PottsCellFlyStemWT.java|14 col 1| Wrong order for 'ec.util.MersenneTwisterFast' import.
src/arcade/potts/agent/cell/PottsCellFlyStemWT.java|16 col 1| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemWT.java|16 col 56| '{' is not preceded with whitespace.
src/arcade/potts/agent/cell/PottsCellFlyStemWT.java|18 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemWT.java|20 col 5| Missing a Javadoc comment.
src/arcade/potts/agent/cell/PottsCellFlyStemWT.java|38| Line is longer than 100 characters (found 119).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemHorizontalSplitBasalReturn.java|24| Line is longer than 100 characters (found 105).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemHorizontalSplitBasalReturn.java|236| Line is longer than 100 characters (found 142).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemHorizontalSplitBasalReturn.java|236| Line is longer than 120 characters (found 142).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemHorizontalSplitBasalReturn.java|236 col 119| Comment matches to-do format 'TODO:'.
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemVerticalSplitRandomReturn.java|21| Line is longer than 100 characters (found 104).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemVerticalSplitRandomReturn.java|232| Line is longer than 100 characters (found 141).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemVerticalSplitRandomReturn.java|232| Line is longer than 120 characters (found 141).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemVerticalSplitRandomReturn.java|232 col 118| Comment matches to-do format 'TODO:'.
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemVerticalSplitLeftReturn.java|21| Line is longer than 100 characters (found 102).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemVerticalSplitLeftReturn.java|233| Line is longer than 100 characters (found 112).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemTwoThirdsSplitApicalReturn.java|21| Line is longer than 100 characters (found 105).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemTwoThirdsSplitApicalReturn.java|233| Line is longer than 100 characters (found 142).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemTwoThirdsSplitApicalReturn.java|233| Line is longer than 120 characters (found 142).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemTwoThirdsSplitApicalReturn.java|233 col 119| Comment matches to-do format 'TODO:'.
src/arcade/potts/agent/module/PottsModuleProliferation.java|99| Line is longer than 100 characters (found 109).
src/arcade/potts/agent/module/PottsModuleProliferation.java|99 col 86| Comment matches to-do format 'TODO:'.
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemOneThirdSplitBasalReturn.java|21| Line is longer than 100 characters (found 103).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemOneThirdSplitBasalReturn.java|233| Line is longer than 100 characters (found 145).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemOneThirdSplitBasalReturn.java|233| Line is longer than 120 characters (found 145).
src/arcade/potts/agent/module/PottsModuleProliferationFlyStemOneThirdSplitBasalReturn.java|233 col 122| Comment matches to-do format 'TODO:'.
src/arcade/potts/env/location/PottsLocation.java|296 col 5| Class 'PottsLocation' looks like designed for extension (can be subclassed), but the method 'splitHalvesHorizontallyReturnBasalHalf' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PottsLocation' final or making the method 'splitHalvesHorizontallyReturnBasalHalf' static/final/abstract/empty, or adding allowed annotation for the method.
src/arcade/potts/env/location/PottsLocation.java|296 col 5| Missing a Javadoc comment.
src/arcade/potts/env/location/PottsLocation.java|316| Line is longer than 100 characters (found 133).
src/arcade/potts/env/location/PottsLocation.java|316| Line is longer than 120 characters (found 133).
src/arcade/potts/env/location/PottsLocation.java|316 col 5| Class 'PottsLocation' looks like designed for extension (can be subclassed), but the method 'splitHalvesVerticallyReturnRandomHalf' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PottsLocation' final or making the method 'splitHalvesVerticallyReturnRandomHalf' static/final/abstract/empty, or adding allowed annotation for the method.
src/arcade/potts/env/location/PottsLocation.java|316 col 5| Missing a Javadoc comment.
src/arcade/potts/env/location/PottsLocation.java|316 col 91| Comment matches to-do format 'TODO:'.
src/arcade/potts/env/location/PottsLocation.java|340| Line is longer than 100 characters (found 131).
src/arcade/potts/env/location/PottsLocation.java|340| Line is longer than 120 characters (found 131).
src/arcade/potts/env/location/PottsLocation.java|340 col 5| Class 'PottsLocation' looks like designed for extension (can be subclassed), but the method 'splitHalvesVerticallyReturnLeftHalf' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PottsLocation' final or making the method 'splitHalvesVerticallyReturnLeftHalf' static/final/abstract/empty, or adding allowed annotation for the method.
src/arcade/potts/env/location/PottsLocation.java|340 col 5| Missing a Javadoc comment.
src/arcade/potts/env/location/PottsLocation.java|340 col 89| Comment matches to-do format 'TODO:'.
src/arcade/potts/env/location/PottsLocation.java|361| Line is longer than 100 characters (found 134).
src/arcade/potts/env/location/PottsLocation.java|361| Line is longer than 120 characters (found 134).
src/arcade/potts/env/location/PottsLocation.java|361 col 5| Class 'PottsLocation' looks like designed for extension (can be subclassed), but the method 'splitTwoThirdsOneThirdKeepTopTwoThirds' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PottsLocation' final or making the method 'splitTwoThirdsOneThirdKeepTopTwoThirds' static/final/abstract/empty, or adding allowed annotation for the method.
src/arcade/potts/env/location/PottsLocation.java|361 col 5| Missing a Javadoc comment.
src/arcade/potts/env/location/PottsLocation.java|361 col 5| 'METHOD_DEF' has more than 1 empty lines before.
src/arcade/potts/env/location/PottsLocation.java|361 col 92| Comment matches to-do format 'TODO:'.
src/arcade/potts/env/location/PottsLocation.java|380 col 5| Class 'PottsLocation' looks like designed for extension (can be subclassed), but the method 'getTopTwoThirds' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PottsLocation' final or making the method 'getTopTwoThirds' static/final/abstract/empty, or adding allowed annotation for the method.
src/arcade/potts/env/location/PottsLocation.java|380 col 5| Missing a Javadoc comment.
src/arcade/potts/env/location/PottsLocation.java|408 col 5| Class 'PottsLocation' looks like designed for extension (can be subclassed), but the method 'getTopOneThird' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PottsLocation' final or making the method 'getTopOneThird' static/final/abstract/empty, or adding allowed annotation for the method.
src/arcade/potts/env/location/PottsLocation.java|408 col 5| Missing a Javadoc comment.
src/arcade/potts/env/location/PottsLocation.java|408 col 34| '{' is not preceded with whitespace.
src/arcade/potts/env/location/PottsLocation.java|436| Line is longer than 100 characters (found 137).
src/arcade/potts/env/location/PottsLocation.java|436| Line is longer than 120 characters (found 137).
src/arcade/potts/env/location/PottsLocation.java|436 col 5| Class 'PottsLocation' looks like designed for extension (can be subclassed), but the method 'splitOneThirdTwoThirdsKeepBottomTwoThirds' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PottsLocation' final or making the method 'splitOneThirdTwoThirdsKeepBottomTwoThirds' static/final/abstract/empty, or adding allowed annotation for the method.
src/arcade/potts/env/location/PottsLocation.java|436 col 5| Missing a Javadoc comment.
src/arcade/potts/env/location/PottsLocation.java|436 col 95| Comment matches to-do format 'TODO:'.
src/arcade/potts/env/location/PottsLocationContainer.java|7 col 8| Unused import - arcade.core.util.MiniBox.
src/arcade/potts/sim/PottsSeries.java|194 col 15| Comment matches to-do format 'TODO:'.
setup/setupMudmutTwoStemDaughtersStemDaughterRandom.xml|1| File does not end with a newline.
setup/setupWT.xml|1| File does not end with a newline.
setup/setupMUDmutOneStemDaughterStemDaughterLeft.xml|1| File does not end with a newline.
setup/setupMUDmutOneStemDaughterStemDaughterRandom.xml|1| File does not end with a newline.
setup/setupInvertTwoStemDaughtersStemDaughterBasalOrBoth.xml|1| File does not end with a newline.
setup/setupSymmetricTwoStemDaughtersStemDaughterApicalOrBoth.xml|1| File does not end with a newline.
setup/setupSymmetricOneStemDaughterStemDaughterApical.xml|1| File does not end with a newline.
setup/setupInvertOneStemDaughterStemDaughterBasal.xml|1| File does not end with a newline.
Filtered Findings (0)
Annotations
Check failure on line 154 in src/arcade/patch/agent/process/PatchProcessSignalingMedium.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/process/PatchProcessSignalingMedium.java#L154 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/process/PatchProcessSignalingMedium.java:154:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 73 in src/arcade/patch/agent/process/PatchProcessMetabolismSimple.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/process/PatchProcessMetabolismSimple.java#L73 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/process/PatchProcessMetabolismSimple.java:73:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 37 in src/arcade/patch/agent/process/PatchProcessSignalingRandom.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/process/PatchProcessSignalingRandom.java#L37 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/process/PatchProcessSignalingRandom.java:37:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 225 in src/arcade/patch/agent/process/PatchProcessSignalingComplex.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/process/PatchProcessSignalingComplex.java#L225 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/process/PatchProcessSignalingComplex.java:225:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 116 in src/arcade/patch/agent/process/PatchProcessSignalingSimple.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/process/PatchProcessSignalingSimple.java#L116 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/process/PatchProcessSignalingSimple.java:116:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 83 in src/arcade/patch/agent/process/PatchProcessMetabolismMedium.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/process/PatchProcessMetabolismMedium.java#L83 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/process/PatchProcessMetabolismMedium.java:83:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 100 in src/arcade/patch/agent/process/PatchProcessMetabolismComplex.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/process/PatchProcessMetabolismComplex.java#L100 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/process/PatchProcessMetabolismComplex.java:100:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 56 in src/arcade/patch/agent/cell/PatchCellCancerStem.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/cell/PatchCellCancerStem.java#L56 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/cell/PatchCellCancerStem.java:56:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 181 in src/arcade/patch/agent/cell/PatchCell.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/cell/PatchCell.java#L181 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/cell/PatchCell.java:181:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 319 in src/arcade/patch/agent/cell/PatchCell.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/cell/PatchCell.java#L319 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/cell/PatchCell.java:319:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 433 in src/arcade/patch/agent/cell/PatchCell.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/cell/PatchCell.java#L433 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/cell/PatchCell.java:433:19: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 440 in src/arcade/patch/agent/cell/PatchCell.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/cell/PatchCell.java#L440 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/cell/PatchCell.java:440:11: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 80 in src/arcade/patch/agent/module/PatchModuleProliferation.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/module/PatchModuleProliferation.java#L80 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/module/PatchModuleProliferation.java:80:23: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 107 in src/arcade/patch/agent/module/PatchModuleProliferation.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/module/PatchModuleProliferation.java#L107 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/module/PatchModuleProliferation.java:107:23: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 60 in src/arcade/patch/agent/module/PatchModuleMigration.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/agent/module/PatchModuleMigration.java#L60 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/module/PatchModuleMigration.java:60:23: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 155 in src/arcade/patch/sim/output/PatchOutputSerializer.java
github-actions / checkstyle
[checkstyle] src/arcade/patch/sim/output/PatchOutputSerializer.java#L155 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>
Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/sim/output/PatchOutputSerializer.java:155:15: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)
Check failure on line 364 in src/arcade/core/gui/GUI.java
github-actions / checkstyle
[checkstyle] src/arcade/core/gui/GUI.java#L364 <com.puppycrawl.tools.checkstyle.checks.design.FinalClassCheck>
Class XMLFileFilter should be declared as final.
Raw output
/github/workspace/./src/arcade/core/gui/GUI.java:364:5: error: Class XMLFileFilter should be declared as final. (com.puppycrawl.tools.checkstyle.checks.design.FinalClassCheck)
Check failure on line 14 in src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java
github-actions / checkstyle
[checkstyle] src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java#L14 <com.puppycrawl.tools.checkstyle.checks.imports.ImportOrderCheck>
Wrong order for 'ec.util.MersenneTwisterFast' import.
Raw output
/github/workspace/./src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java:14:1: error: Wrong order for 'ec.util.MersenneTwisterFast' import. (com.puppycrawl.tools.checkstyle.checks.imports.ImportOrderCheck)
Check failure on line 16 in src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java
github-actions / checkstyle
[checkstyle] src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java#L16 <com.puppycrawl.tools.checkstyle.checks.javadoc.MissingJavadocTypeCheck>
Missing a Javadoc comment.
Raw output
/github/workspace/./src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java:16:1: error: Missing a Javadoc comment. (com.puppycrawl.tools.checkstyle.checks.javadoc.MissingJavadocTypeCheck)
Check failure on line 16 in src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java
github-actions / checkstyle
[checkstyle] src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java#L16 <com.puppycrawl.tools.checkstyle.checks.whitespace.WhitespaceAroundCheck>
'{' is not preceded with whitespace.Raw output
/github/workspace/./src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java:16:71: error: '{' is not preceded with whitespace. (com.puppycrawl.tools.checkstyle.checks.whitespace.WhitespaceAroundCheck)
Check failure on line 18 in src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java
github-actions / checkstyle
[checkstyle] src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java#L18 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>
Missing a Javadoc comment.
Raw output
/github/workspace/./src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java:18:5: error: Missing a Javadoc comment. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck)
Check failure on line 19 in src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java
github-actions / checkstyle
[checkstyle] src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java#L19 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>
Missing a Javadoc comment.
Raw output
/github/workspace/./src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java:19:5: error: Missing a Javadoc comment. (com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck)
Check failure on line 19 in src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java
github-actions / checkstyle
[checkstyle] src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java#L19 <com.puppycrawl.tools.checkstyle.checks.whitespace.EmptyLineSeparatorCheck>
'VARIABLE_DEF' should be separated from previous line.
Raw output
/github/workspace/./src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java:19:5: error: 'VARIABLE_DEF' should be separated from previous line. (com.puppycrawl.tools.checkstyle.checks.whitespace.EmptyLineSeparatorCheck)
Check failure on line 19 in src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java
github-actions / checkstyle
[checkstyle] src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java#L19 <com.puppycrawl.tools.checkstyle.checks.whitespace.EmptyLineSeparatorCheck>
';' should be separated from previous line.
Raw output
/github/workspace/./src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java:19:50: error: ';' should be separated from previous line. (com.puppycrawl.tools.checkstyle.checks.whitespace.EmptyLineSeparatorCheck)
Check failure on line 21 in src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java
github-actions / checkstyle
[checkstyle] src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java#L21 <LineLength>
Line is longer than 100 characters (found 114).
Raw output
/github/workspace/./src/arcade/potts/agent/cell/PottsCellFlyStemMUDMut2StemRandom.java:21:0: error: Line is longer than 100 characters (found 114). (LineLength)