fixed bug in wt behavior

bagherilab · Aug 7, 2024 · e965089 · e965089
1 parent f0fb88b
commit e965089
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Showing 3 changed files with 3 additions and 1 deletion.
diff --git a/setup/setupSymmetricTwoStemDaughtersStemDaughterApicalOrBoth.xml b/setup/setupSymmetricTwoStemDaughtersStemDaughterApicalOrBoth.xml
@@ -15,6 +15,7 @@
                 </population>
                 <population id="neuron" init="0">
                 </population>
+                <population id="stemdaughter" init="0" class="flystem-symmetric-onestemdaughter-stemdaughterapical" />
             </populations>
         </agents>
     </series>

diff --git a/src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java b/src/arcade/potts/agent/cell/PottsCellFlyStemSymmetric2StemApicalOrBoth.java
@@ -30,7 +30,7 @@ public PottsCellFlyStemSymmetric2StemApicalOrBoth(int id, int parent, int pop, C
     public PottsCell make(int newID, CellState newState, Location newLocation,
                           MersenneTwisterFast random) {
         divisions++;
-        // 50% chance daughter is PottsCellFlyStemSymmetric1StemApical, 50% chance it is neuron
+        // 50% chance daughter is PottsCellFlyStemSymmetric2StemApical, 50% chance it is neuron
         if (random.nextBoolean()) {
             return new PottsCellFlyStemSymmetric2StemApicalOrBoth(newID, id, pop, newState, age, divisions, newLocation,
                     hasRegions, this.getParameters(), criticalVolume, criticalHeight,

diff --git a/src/arcade/potts/agent/cell/PottsCellFlyStemWT.java b/src/arcade/potts/agent/cell/PottsCellFlyStemWT.java
@@ -34,6 +34,7 @@ public PottsCell make(int newID, CellState newState, Location newLocation,
         for (String key : this.getParameters().getKeys()) {
             newParameters.put(key, this.getParameters().get(key));
         }
+        newParameters.put("proliferation/CELL_GROWTH_RATE", "0");
         return new PottsCellFlyNeuronWT(newID, id, POTTS_CELL_FLY_NEURON_WT_POP, newState, age, divisions, newLocation,
                 hasRegions, newParameters, criticalVolume, criticalHeight,
                 criticalRegionVolumes, criticalRegionHeights);