Releases: bagherilab/ARCADE
ARCADE v3.1.4
Full Changelog: v2.4...v3.1.4
ARCADE v2.4
This release contains the code associated with the article:
JS Yu & N Bagheri. (2024). Model design choices impact biological insight: Unpacking the broad landscape of spatial-temporal model development decisions. PLoS Computational Biology. doi: 10.1371/journal.pcbi.1011917
Features
- support for rectangular and hexagonal geometry
- add cycle and pulse components
- updated 3D visualization
ARCADE v2.3
This release contains the code associated with the article:
JS Yu & N Bagheri. (2021). Modular microenvironment components reproduce vascular dynamics de novo in a multi-scale agent-based model. Cell Systems. doi: 10.1016/j.cels.2021.05.007
Features
- modular environment components for defining nutrient sources
- realistic vasculature generation and exact hemodynamic calculations
- Gradle build automation
ARCADE v2.2
This release contains the code associated with the article:
JS Yu & N Bagheri. (2020). Agent-based models predict emergent behavior of heterogeneous cell populations in dynamic microenvironments. Frontiers in Bioengineering and Biotechnology. doi: 10.3389/fbioe.2020.00249
Features
- application and command line interface for running simulations
- XML-based simulation setup files
- custom interface structure for modular, extensible biological models