Fix pyhmmer.tests.test_plan7.test_hmmfile to work with editable ins…

…tall
althonos · Jul 8, 2024 · 307e8af · 307e8af
1 parent 0942dc1
commit 307e8af
Showing 1 changed file with 11 additions and 11 deletions.
diff --git a/pyhmmer/tests/test_plan7/test_hmmfile.py b/pyhmmer/tests/test_plan7/test_hmmfile.py
@@ -40,22 +40,22 @@ def test_empty(self):
             self.assertRaises(EOFError, self.open_hmm, empty.name)
 
     def test_read_hmmpressed(self):
-        path = os.path.join(self.hmms_folder, "db", "{}.hmm".format(self.ID))
+        path = self.hmms_folder.joinpath("db", "{}.hmm".format(self.ID))
         with self.open_hmm(path) as f:
             self.check_hmmfile(f)
 
     def test_read_h3m(self):
-        path = os.path.join(self.hmms_folder, "bin", "{}.h3m".format(self.ID))
+        path = self.hmms_folder.joinpath("bin", "{}.h3m".format(self.ID))
         with self.open_hmm(path) as f:
             self.check_hmmfile(f)
 
     def test_read_hmm3(self):
-        path = os.path.join(self.hmms_folder, "txt", "{}.hmm".format(self.ID))
+        path = self.hmms_folder.joinpath("txt", "{}.hmm".format(self.ID))
         with self.open_hmm(path) as f:
             self.check_hmmfile(f)
 
     def test_read_hmm2(self):
-        path = os.path.join(self.hmms_folder, "txt2", "{}.hmm2".format(self.ID))
+        path = self.hmms_folder.joinpath("txt2", "{}.hmm2".format(self.ID))
         with self.open_hmm(path) as f:
             self.check_hmmfile(f)
 
@@ -68,7 +68,7 @@ def open_hmm(self, path):
         return HMMFile(buffer)
 
     def test_name(self):
-        path = os.path.join(self.hmms_folder, "db", "{}.hmm".format(self.ID))
+        path = self.hmms_folder.joinpath("db", "{}.hmm".format(self.ID))
         with self.open_hmm(path) as f:
             self.assertIs(f.name, None)
 
@@ -89,12 +89,12 @@ def test_init_error_folder(self):
         self.assertRaises(IsADirectoryError, HMMFile, folder)
 
     def test_read_optimized_profiles(self):
-        path = os.path.join(self.hmms_folder, "db", "{}.hmm".format(self.ID))
+        path = self.hmms_folder.joinpath("db", "{}.hmm".format(self.ID))
         with self.open_hmm(path) as f:
             self.check_hmmfile(f.optimized_profiles())
 
     def test_rewind(self):
-        path = os.path.join(self.hmms_folder, "txt", "{}.hmm".format(self.ID))
+        path = self.hmms_folder.joinpath("txt", "{}.hmm".format(self.ID))
         with self.open_hmm(path) as f:
             hmm1 = f.read()
             f.rewind()
@@ -103,7 +103,7 @@ def test_rewind(self):
             self.assertEqual(hmm1.name, hmm2.name)
 
     def test_rewind_optimized_profiles(self):
-        path = os.path.join(self.hmms_folder, "db", "{}.hmm".format(self.ID))
+        path = self.hmms_folder.joinpath("db", "{}.hmm".format(self.ID))
         with self.open_pressed(path) as f:
             om1 = f.read()
             f.rewind()
@@ -112,10 +112,10 @@ def test_rewind_optimized_profiles(self):
             self.assertEqual(om1.name, om2.name)
 
     def test_name(self):
-        path = os.path.join(self.hmms_folder, "db", "{}.hmm".format(self.ID))
+        path = self.hmms_folder.joinpath("db", "{}.hmm".format(self.ID))
         with self.open_hmm(path) as f:
-            self.assertEqual(f.name, path)
-            self.assertEqual(f.optimized_profiles().name, path)
+            self.assertEqual(f.name, str(path))
+            self.assertEqual(f.optimized_profiles().name, str(path))
 
 
 class _TestThioesterase(_TestHMMFile):