Package #95
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Package | |
| on: | |
| push: | |
| tags: | |
| - v*.*.* | |
| jobs: | |
| wheel-linux-aarch64: | |
| name: Build Linux wheels (Aarch64) | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python-tag: | |
| - cp36-manylinux_aarch64 | |
| - cp37-manylinux_aarch64 | |
| - cp38-manylinux_aarch64 | |
| - cp39-manylinux_aarch64 | |
| - cp310-manylinux_aarch64 | |
| - cp311-manylinux_aarch64 | |
| - cp312-manylinux_aarch64 | |
| - pp37-manylinux_aarch64 | |
| - pp38-manylinux_aarch64 | |
| - pp39-manylinux_aarch64 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: Set up QEMU | |
| id: qemu | |
| uses: docker/setup-qemu-action@v2 | |
| with: | |
| platforms: all | |
| - name: Build manylinux wheels | |
| uses: pypa/[email protected] | |
| env: | |
| CIBW_ARCHS: aarch64 | |
| CIBW_BUILD: ${{ matrix.python-tag }} | |
| CIBW_BUILD_VERBOSITY: 2 | |
| CIBW_BEFORE_BUILD: pip install cython | |
| CIBW_TEST_COMMAND: python -m unittest pyhmmer.tests -vv | |
| CIBW_TEST_REQUIRES: importlib-resources | |
| with: | |
| output-dir: dist | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: wheels | |
| path: dist/* | |
| wheel-linux-x86_64: | |
| name: Build Linux wheels (x86-64) | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python-tag: | |
| - cp36-manylinux_x86_64 | |
| - cp37-manylinux_x86_64 | |
| - cp38-manylinux_x86_64 | |
| - cp39-manylinux_x86_64 | |
| - cp310-manylinux_x86_64 | |
| - cp311-manylinux_x86_64 | |
| - cp312-manylinux_x86_64 | |
| - pp37-manylinux_x86_64 | |
| - pp38-manylinux_x86_64 | |
| - pp39-manylinux_x86_64 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: stable | |
| override: true | |
| - name: Build manylinux wheels | |
| uses: pypa/[email protected] | |
| env: | |
| CIBW_ARCHS: x86_64 | |
| CIBW_BUILD: ${{ matrix.python-tag }} | |
| CIBW_BEFORE_BUILD: pip install cython | |
| CIBW_BUILD_VERBOSITY: 2 | |
| CIBW_TEST_COMMAND: python -m unittest pyhmmer.tests -vv | |
| CIBW_TEST_REQUIRES: importlib-resources | |
| with: | |
| output-dir: dist | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: wheels | |
| path: dist/* | |
| wheel-macos-x86_64: | |
| name: Build MacOS wheels (x86-64) | |
| runs-on: macOS-11 | |
| strategy: | |
| matrix: | |
| python-tag: | |
| - cp36-macosx_x86_64 | |
| - cp37-macosx_x86_64 | |
| - cp38-macosx_x86_64 | |
| - cp39-macosx_x86_64 | |
| - cp310-macosx_x86_64 | |
| - cp311-macosx_x86_64 | |
| - cp312-macosx_x86_64 | |
| - pp37-macosx_x86_64 | |
| - pp38-macosx_x86_64 | |
| - pp39-macosx_x86_64 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: stable | |
| override: true | |
| - name: Build manylinux wheels | |
| uses: pypa/[email protected] | |
| env: | |
| CIBW_ARCHS: x86_64 | |
| CIBW_BUILD: ${{ matrix.python-tag }} | |
| CIBW_BEFORE_BUILD: pip install cython | |
| CIBW_BUILD_VERBOSITY: 2 | |
| CIBW_TEST_COMMAND: python -m unittest pyhmmer.tests -vv | |
| CIBW_TEST_REQUIRES: importlib-resources | |
| with: | |
| output-dir: dist | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: wheels | |
| path: dist/* | |
| wheel-macos-aarch64: | |
| name: Build MacOS wheels (Aarch64) | |
| runs-on: macOS-11 | |
| strategy: | |
| matrix: | |
| python-tag: | |
| - cp38-macosx_arm64 | |
| - cp39-macosx_arm64 | |
| - cp310-macosx_arm64 | |
| - cp311-macosx_arm64 | |
| - cp312-macosx_arm64 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: stable | |
| override: true | |
| target: aarch64-apple-darwin | |
| - name: Build manylinux wheels | |
| uses: pypa/[email protected] | |
| env: | |
| CIBW_ARCHS: arm64 | |
| CIBW_BUILD: ${{ matrix.python-tag }} | |
| CIBW_BEFORE_BUILD: pip install cython | |
| CIBW_BUILD_VERBOSITY: 2 | |
| CIBW_TEST_COMMAND: python -m unittest pyhmmer.tests -vv | |
| CIBW_TEST_REQUIRES: importlib-resources | |
| with: | |
| output-dir: dist | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: wheels | |
| path: dist/* | |
| sdist: | |
| runs-on: ubuntu-latest | |
| name: Build source distribution | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.11 | |
| - name: Install build requirements | |
| run: python -m pip install -r .github/workflows/requirements.txt | |
| - name: Build wheel distribution | |
| run: python setup.py sdist | |
| - name: Store built wheels | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: wheels | |
| path: dist/* | |
| test-sdist: | |
| runs-on: ubuntu-latest | |
| name: Test source distribution | |
| needs: | |
| - sdist | |
| steps: | |
| - name: Setup Python 3.11 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.11' | |
| - name: Download built wheels | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: wheels | |
| path: dist/ | |
| - name: Update pip to latest version | |
| run: python -m pip install -U pip setuptools wheel | |
| - name: Install built wheel | |
| run: python -m pip install --no-binary pyhmmer --find-links=dist pyhmmer | |
| - name: Run tests without coverage | |
| run: python -m unittest pyhmmer.tests -vv | |
| upload: | |
| environment: PyPI | |
| runs-on: ubuntu-latest | |
| name: Upload | |
| needs: | |
| - sdist | |
| - test-sdist | |
| - wheel-linux-aarch64 | |
| - wheel-linux-x86_64 | |
| - wheel-macos-x86_64 | |
| - wheel-macos-aarch64 | |
| steps: | |
| - name: Download built distributions | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: wheels | |
| path: dist | |
| - name: Publish distributions to PyPI | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| uses: pypa/gh-action-pypi-publish@master | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} | |
| skip_existing: false | |
| release: | |
| environment: GitHub Releases | |
| runs-on: ubuntu-latest | |
| if: "startsWith(github.ref, 'refs/tags/v')" | |
| name: Release | |
| needs: upload | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v1 | |
| - name: Release a Changelog | |
| uses: rasmus-saks/[email protected] | |
| with: | |
| github-token: '${{ secrets.GITHUB_TOKEN }}' | |
| aur: | |
| environment: Arch Linux User Repository | |
| runs-on: ubuntu-latest | |
| if: "!contains(github.ref, 'rc')" | |
| name: Update AUR package | |
| needs: | |
| - sdist | |
| - upload | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.10' | |
| - name: Download built wheels | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: wheels | |
| path: dist | |
| - name: Extract package version | |
| run: "echo PKGVER=$(python setup.py --version) >> $GITHUB_ENV" | |
| - name: Compute SHA256 of source distribution | |
| run: "echo SHA256=$(sha256sum dist/pyhmmer-${{ env.PKGVER }}.tar.gz | cut -f1 -d' ') >> $GITHUB_ENV" | |
| - name: Generate PKGBUILD | |
| run: 'sed -e "s/%pkgver/${{ env.PKGVER }}/g" -e "s/%sha256sum/${{ env.SHA256 }}/g" pkg/aur/PKGBUILD.in > pkg/aur/PKGBUILD' | |
| - name: Update package | |
| uses: KSXGitHub/[email protected] | |
| with: | |
| pkgname: python-pyhmmer | |
| pkgbuild: pkg/aur/PKGBUILD | |
| commit_username: ${{ secrets.AUR_USER }} | |
| commit_email: ${{ secrets.AUR_EMAIL }} | |
| ssh_private_key: ${{ secrets.AUR_SSH_PRIVATE_KEY }} | |
| commit_message: ${{ github.event.head_commit.message }} | |
| ssh_keyscan_types: rsa,dsa,ecdsa,ed25519 |