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Fix supergroup_by parameter in hub.smk to use None as default value Python package #812: Commit 6d65aaa pushed by alsmith151
April 22, 2024 11:16 39m 3s fix-refactor-designip
fix-refactor-designip
April 22, 2024 11:16 39m 3s
Merge branch 'fix-hub-supertracks' into fix-refactor-designip Python package #811: Commit 86978ba pushed by alsmith151
April 22, 2024 09:59 39m 17s fix-refactor-designip
fix-refactor-designip
April 22, 2024 09:59 39m 17s
Refactor snakefile_chip to import remove_unwanted_run_files from seqn… Python package #810: Commit ef48a19 pushed by alsmith151
April 21, 2024 16:49 39m 57s fix-refactor-designip
fix-refactor-designip
April 21, 2024 16:49 39m 57s
Fix left_join in deseq2.qmd.jinja to use sample_info.sample_name inst… Python package #809: Commit 7610f61 pushed by alsmith151
April 21, 2024 16:30 40m 14s fix-refactor-designip
fix-refactor-designip
April 21, 2024 16:30 40m 14s
Fix left_join in deseq2.qmd.jinja to use sample_info.sample_name inst… Python package #808: Commit 25f859b pushed by alsmith151
April 21, 2024 16:29 37m 21s fix-refactor-designip
fix-refactor-designip
April 21, 2024 16:29 37m 21s
fix left_join in deseq2.qmd.jinja to use sample_info.sample_name inst… Python package #807: Commit ad0da6d pushed by alsmith151
April 21, 2024 16:25 38m 10s fix-refactor-designip
fix-refactor-designip
April 21, 2024 16:25 38m 10s
Refactor pileup_norm.smk to use input.chromsizes and params.tile_size… Python package #806: Commit 62b4af1 pushed by alsmith151
April 21, 2024 16:21 38m 27s fix-refactor-designip
fix-refactor-designip
April 21, 2024 16:21 38m 27s
Refactor spike-in normalization check in snakefile_rna Python package #805: Commit 64de2ed pushed by alsmith151
April 21, 2024 15:42 33m 28s fix-refactor-designip
fix-refactor-designip
April 21, 2024 15:42 33m 28s
Refactor calculate_spikein_norm_factors.r to use relative path for sc… Python package #804: Commit a72b3a2 pushed by alsmith151
April 21, 2024 15:39 33m 49s fix-refactor-designip
fix-refactor-designip
April 21, 2024 15:39 33m 49s
Add rule calculate_scaling_factors_spikein to pileup_norm.smk Python package #803: Commit 37f012c pushed by alsmith151
April 21, 2024 15:38 34m 32s fix-refactor-designip
fix-refactor-designip
April 21, 2024 15:38 34m 32s
Refactor snakefiles to use remove_unwanted_run_files function for cle… Python package #802: Commit ca9d893 pushed by alsmith151
April 21, 2024 15:29 15m 35s fix-refactor-designip
fix-refactor-designip
April 21, 2024 15:29 15m 35s
Fix scale_method assignment in BigWigFiles model Python package #801: Commit 1c046d5 pushed by alsmith151
April 21, 2024 14:59 33m 57s fix-refactor-designip
fix-refactor-designip
April 21, 2024 14:59 33m 57s
Update deeptools threads to 8 in seqnado/config.py Python package #800: Commit cbd6ba5 pushed by alsmith151
April 21, 2024 14:46 17m 44s fix-refactor-designip
fix-refactor-designip
April 21, 2024 14:46 17m 44s
fix: updated chip test files Python package #799: Commit ad2f08a pushed by alsmith151
April 21, 2024 14:32 15m 32s fix-refactor-designip
fix-refactor-designip
April 21, 2024 14:32 15m 32s
Fix condition for checking number of peak lines in validate_peaks rule Python package #798: Commit 38a27f6 pushed by alsmith151
April 17, 2024 15:52 14m 18s fix-refactor-designip
fix-refactor-designip
April 17, 2024 15:52 14m 18s
Fix bowtie2 options in config_yaml_for_testing function Python package #797: Commit dd7adbf pushed by alsmith151
April 17, 2024 15:50 14m 58s fix-refactor-designip
fix-refactor-designip
April 17, 2024 15:50 14m 58s
Refactor exogenous_norm.smk and pileup_norm.smk rules to remove unuse… Python package #796: Commit 35a84fc pushed by alsmith151
April 17, 2024 15:39 15m 8s fix-refactor-designip
fix-refactor-designip
April 17, 2024 15:39 15m 8s
Refactor get_group_for_sample function in helpers.py to handle missin… Python package #795: Commit d21ecfd pushed by alsmith151
April 17, 2024 15:39 13m 54s fix-refactor-designip
fix-refactor-designip
April 17, 2024 15:39 13m 54s
fix: corrects always adding unscaled to bigwigs Python package #794: Commit 43aedb8 pushed by alsmith151
April 17, 2024 15:38 13m 55s fix-refactor-designip
fix-refactor-designip
April 17, 2024 15:38 13m 55s
Refactor DesignIP class to handle different types of designs Python package #793: Commit 795d87c pushed by alsmith151
April 16, 2024 16:53 24m 58s fix-refactor-designip
fix-refactor-designip
April 16, 2024 16:53 24m 58s
Refactor alignment_post_processing.smk and pileup_grouped.smk rules Python package #792: Commit a87e523 pushed by alsmith151
April 16, 2024 16:45 4m 58s fix-refactor-designip
fix-refactor-designip
April 16, 2024 16:45 4m 58s
Add pandera to dependencies in pyproject.toml Python package #791: Commit 96f63bc pushed by alsmith151
April 16, 2024 14:55 3m 11s fix-refactor-designip
fix-refactor-designip
April 16, 2024 14:55 3m 11s
Fix control file naming issue in DesignIP class Python package #790: Commit 10c4459 pushed by alsmith151
April 13, 2024 16:50 3m 9s fix-refactor-designip
fix-refactor-designip
April 13, 2024 16:50 3m 9s
Refactor DesignIP class to include from_directory method Python package #789: Commit cbccad8 pushed by alsmith151
April 13, 2024 15:58 3m 2s fix-refactor-designip
fix-refactor-designip
April 13, 2024 15:58 3m 2s
Fix sample name assignment in DesignIP class Python package #788: Commit 7b9b5bf pushed by alsmith151
April 13, 2024 15:51 2m 58s fix-refactor-designip
fix-refactor-designip
April 13, 2024 15:51 2m 58s