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fix left_join in deseq2.qmd.jinja to use sample_info.sample_name inst…
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…ead of sample_info.sample
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alsmith151 committed Apr 21, 2024
1 parent 62b4af1 commit ad0da6d
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion seqnado/workflow/config/deseq2.qmd.jinja
Original file line number Diff line number Diff line change
Expand Up @@ -485,7 +485,7 @@ top_DE_genes <- normCounts %>%
values_to = "count",
names_to = "sample"
) %>%
left_join(sample_info, by = "sample") %>%
left_join(sample_info, by = "sample_name") %>%
mutate(gene = factor(gene, levels = unique(gene)))

p <- ggplot(data = top_DE_genes, aes(x = deseq2, y = count, color = deseq2)) +
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