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Issues list

pandas.errors.InvalidIndexError: Reindexing only valid with uniquely valued Index objects
#171 opened Sep 19, 2024 by Quentin-bioinfo
plot_metadata: X11 connection rejected because of wrong authentication / Cannot load backend 'TkAgg' which requires the 'tk' interactive framework, as 'headless' is currently running
#170 opened Sep 18, 2024 by strawberry098
1
SCENIC+: pycistopic QC errors
#169 opened Sep 17, 2024 by skoturan
2
Bug report [BUG] cistopic_obj has nan values for sample and leiden column after adding cell_data
#168 opened Sep 17, 2024 by yojetsharma
Bug report [BUG] Trying to merge (cis_object_list) but gives an error that it is not defined
#167 opened Sep 15, 2024 by yojetsharma
1
Installation error
#165 opened Sep 10, 2024 by HabibaAbdelhalimm
4
Bug report [Pycistopic Temporary Fragment file cannot be found]
#162 opened Sep 4, 2024 by yrsong001
2
run_umap error
#160 opened Aug 29, 2024 by strawberry098
3
Feature request [FEATURE] Easily understandable tutorials
#159 opened Aug 28, 2024 by yojetsharma
find_highly_variable_features [PERFORMANCE]
#156 opened Aug 21, 2024 by maithermbarros
5
Avoid making dense matrix in create_cistopic_object_from_fragments reduces memory 50X [PERFORMANCE]
#148 opened Jun 15, 2024 by davidhbrann
4
Cargo, the Rust package manager, is not installed or is not on PATH.
#147 opened Jun 7, 2024 by massonix
4
pyGREAT gives error: AttributeError: 'NoneType' object has no attribute 'text
#143 opened May 16, 2024 by MubasherMohammed
2
Memory issue even after bigmem
#142 opened May 14, 2024 by TingTingShao
7
linux installation error
#128 opened Apr 7, 2024 by kakaisi
1
NameError: name 'subset_list' is not defined
#124 opened Mar 28, 2024 by w1973145618
1
NameError: name 'Tuple' is not defined
#123 opened Mar 27, 2024 by w1973145618
3
CalledProcessError: Command '['/home/taxue/mywork/pycisTopic/Mallet-202108/bin/mallet', 'import-file', '--preserve-case', '--keep-sequence', '--token-regex', '\\S+', '--input', './scratch/leuven/330/vsc33053/ray_spill/mallet/tutorial/corpus.txt', '--output', './scratch/leuven/330/vsc33053/ray_spill/mallet/tutorial/corpus.mallet']' returned non-zero exit status 127.Bug report [BUG]
#121 opened Mar 25, 2024 by w1973145618
1
export_pseudobulk never generates pseudobulk files
#117 opened Mar 21, 2024 by SITRR
14
Topics has been calculated to number 350, but the loglikelihood is still not optimal.
#114 opened Mar 8, 2024 by YH-Zheng
3
Where can I find the "MO_GEX_seurat_Cortex.loom" file used in the multiple multiome tutorial?
#113 opened Feb 28, 2024 by mossconfuse
1
Running pycisTopic on very large datasets [PERFORMANCE]
#106 opened Jan 23, 2024 by simozhou
10
Create a cistopic object using ATAC-seq count matrix (peak by cell)?
#101 opened Nov 1, 2023 by CYorick
2
Error when running plot_topic() - Unable to determine Axes to steal space for Colorbar
#99 opened Sep 29, 2023 by solvi808
Numba ConstantInferenceError in find_diff_features [BUG]
#94 opened Sep 19, 2023 by josephineyates
6
ProTip! Follow long discussions with comments:>50.