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1. cisTopic cisTopic Public

   cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

   HTML 135 29

2. SCENIC SCENIC Public

   SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

   HTML 412 94

3. SCope SCope Public

   Fast visualization tool for large-scale and high dimensional single-cell data

   Python 68 15

4. pySCENIC pySCENIC Public

   pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene reg…

   Python 420 179

5. AUCell AUCell Public

   AUCell: score single cells with gene regulatory networks

   R 121 26

6. pycisTopic pycisTopic Public

   pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.

   Jupyter Notebook 56 10