restore peptide index support #71
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…ein file position for peptide index search
…plate named 'function' in namespace 'std' even with <functional> included in Threadpool.h
… thru CometWrapper.
…umSearchMultiResults().
remove extra '-' in "--std=c++14" option
jke000
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Jan 2, 2025
* add CometPeptideIndex files * use proper mutex to protect g_pvDBIndex and fix capturing proper protein file position for peptide index search * update VS project with CometPeptideIndex.cpp and .h files * Add CreatePeptideIndex and CreateFragmentIndex to CometWrapper. * Get peptide index working for DoSingleSpectrumSearchMultiResults call thru CometWrapper. * address memory leak in GetPrevNextAA that showed up with peptide index RTS * Skip some peptide index parsing on subsequent calls to DoSingleSpectrumSearchMultiResults().
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Add the ability to search either a peptide index or a fragment ion index. Both index formats have the same .idx extension; Comet will parse the header to identify which index type it is when performing a search. On the command line, "-i" will trigger creating a fragment ion index while "-j" will trigger creating a peptide index. I still need to confirm there are mechanisms to create both of these programmatically in C# through CometWrapper.dll.